<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00130

Description Uncharacterized protein
SequenceMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNPIQNSLQSTAASNSKNPQDPASQSMQSQMQNQVQQLPIPMVSNQSQVRQQLLSQNIQNSISSTGVPNSAGLSSALPPVGGMSQGTMPSVPGQNPNMQNIQNMSNVTPNAVGNSMGQGVPSNMYANSQRQIQGRQQQAVTQEQQQQNQNPQQYIYNQQLQQHLMKQKLQQGGVPQAIMQQQQNLLQTNQLQSSQQAAMQPSLRQTSASSTLQNQQSTQSMLQQQSQSVLRQQQQQQQQQQPQQSSIMHQQQTSMPQHPMLPTQQQQQQQQLSGQQPNSANMQHNQLIGQQNSILDAQQLQQQQQRIIAQQNNISNMQQQQTINQQNNLSNMHQQQSTGQPNNLPNMHQQQLGPQSNLSGFQQQQMVGMQHGNTTLQTNQQPVHMLQQSKVSVQQHQQNMSNMLPNQTQQPQSQPMQQQMMSQIQSQPGQMQQQLGMQQQVNNHPRDMQQRIQTSSPLLQQQTTIDQQKQMLQSQRVIPEVPLTSLDSSSQTGNASGGDWQEEIYQKIKTMNERYFPELNEMCKRMAAKLQQHDALPQQPKNEQLEKLKFLKSLLERLIQFLQTNKNEIQLHHKEKMGGVEKQIVNILNSNRPRKPVSSMQQGQLSQPHIHAMQQSQQPQPQISQMHMNEGQMNSQLQQMNVQGSLVTSQQNNMTNMQHNSLSSSVSNVSNSRQNMMDTLQPSSNIDPGQGNSLNQMQQVAMSSLQQNPVSGPQQMNINPISSQSGLTTLQSNLNPLQANSNILQPQQIKQEQQMFSSQQLKQEQQMFSNQQLKQQYQQRQIQQQYMQRQQLIQQQQQTAQQQSAQLPSQQMIQLNQMNDANDMKMRHQMGAKPGVLQPHNSSGQRQSYHHQQMKSGAPFSISSQQVHQAASPQLGHHHSPQIDQQSLLASHSKAGTPLQSANSPFIVPSPSTSMAPSPLPSDSEKMNSGVTSLSNVGNSMHHPTTAASVPNQSLAIGTPGISASPLLAEFTSPDGAHGVASTIVSGNSNVVEQPLERLIKVVKSMSRNALSASVSDIGSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDAPSGTKKMRRYTSAMPPDVVSSTGSVNDSLRHLNGNESDGESTGASSIKRPRVQANHALEEELREINQRLIDTIVYISEDDVDPTAVAAAAEGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLFIPNNYPNCSPVLLDKFPVEVSKEYEDISIKAKSRFSISLRTLAQPMSLGEIARTWDNCARTVISEYAQQSGGGTFSSKYGTWENCLSAA
Length1336
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.03
Grand average of hydropathy-0.844
Instability index74.52
Isoelectric point9.28
Molecular weight148246.94
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00130
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     173.26|      30|      30|     365|     394|       1
---------------------------------------------------------------------------
  280-  306 (35.69/ 6.28)	QS..QSvlrQQ......QQQQQQQQPQQSSIMHQQ
  359-  390 (50.82/13.41)	QQriIA...QQNNISNMQQQQTINQQNNLSNMHQQ
  391-  419 (46.94/11.58)	QS..TG...QPNNLPNMHQQQ.LGPQSNLSGFQQQ
  659-  684 (39.81/ 8.22)	Q...LS...QP.HIHAMQQSQ..QPQPQISQMHMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     322.15|      47|      47|     709|     755|       2
---------------------------------------------------------------------------
  189-  232 (51.81/ 9.79)	GRQQQAVTQEQQQQNQNPQQYIY.NQQLQQhL..MKQ.......KLQQ....GGV...P.QA.
  432-  469 (59.21/12.46)	QTNQQPVHMLQQS.KV......S.VQQHQQ.N..MSN.......MLPN.QTQ..Q...P.QSQ
  470-  517 (54.62/10.81)	PMQQQMMSQIQ.S.Q..PGQMQQ.QLGMQQ......QvnnhprdMQQRiQTSSPL...L.QQQ
  726-  774 (68.11/15.68)	NSRQNMMDTLQPSSNIDPGQGNS.LNQMQQ.V.aMSS.......LQQN.PVSGPQ...QmNIN
  853-  898 (43.22/ 6.69)	QTAQ......QQSAQLPSQQMIQ.LNQMND.AndM.K.......MRHQmGAKPGVlqpH.NSS
  968- 1009 (45.20/ 7.40)	TS...MAPSPLPS...DSEKMNSgVTSLSN.V..GNS.......MHHP.TTAASV...P.NQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.18|      16|      17|     818|     834|       3
---------------------------------------------------------------------------
  311-  326 (30.45/ 8.30)	PQHPMLPTQQ.QQQQQQ
  818-  834 (25.73/ 9.07)	QEQQMFSNQQlKQQYQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.21|      29|      30|     116|     145|       6
---------------------------------------------------------------------------
   67-   96 (34.94/ 8.65)	AASNSKNPqdPASQ..SMQSQMQNQVQQL...PIP......
   97-  124 (29.66/ 7.89)	..MVSNQS..QVRQqlLSQNIQNS.ISST...GVP.....N
  126-  145 (26.33/ 7.30)	AGLSSALP..PVGG..MSQGTMPS.................
  147-  182 (36.28/ 9.45)	PGQNPNMQ..NIQN..MSNVT.PNAVGNSmgqGVPsnmyaN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.64|      16|      24|    1290|    1305|       7
---------------------------------------------------------------------------
 1242- 1255 (22.95/12.63)	.QPLRL.FIPN...NYPNC
 1290- 1305 (32.35/21.37)	AQPMSLGEIAR...TWDNC
 1314- 1332 (25.34/14.86)	AQQSGGGTFSSkygTWENC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.10|      26|      66|    1070|    1095|       8
---------------------------------------------------------------------------
 1070- 1095 (42.03/28.56)	VSDIGSVVSMVDRIAGSAPGNGSRAA
 1137- 1162 (38.07/25.07)	VSSTGSVNDSLRHLNGNESDGESTGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.53|      15|     238|     698|     713|      11
---------------------------------------------------------------------------
  339-  353 (24.46/ 7.25)	HNQLIGQQNSILDAQ
  699-  713 (27.06/14.68)	GSLVTSQQNNMTNMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.21|      14|      36|     802|     815|      15
---------------------------------------------------------------------------
  802-  815 (25.07/ 8.26)	QQIKQEQQMFSSQQ
  839-  852 (25.14/ 8.31)	QQYMQRQQLIQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.08|      22|      37|     900|     928|      16
---------------------------------------------------------------------------
  900-  928 (35.83/28.92)	QRQSYHHQQMKSGAPFsissqqvHQAASP
  939-  960 (38.25/17.78)	DQQSLLASHSKAGTPL.......QSANSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      49.52|      10|      16|    1013|    1022|      17
---------------------------------------------------------------------------
 1013- 1022 (18.12/ 9.01)	GTPGISASPL
 1031- 1039 (15.10/ 6.25)	GAHGV.ASTI
 1042- 1051 (16.31/ 7.36)	GNSNVVEQPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00130 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FFTQDAPSGTKKMRRYTSAMPPDVVSSTGSVNDSLRHLNGNESDGESTGASSIKRPRVQANHAL
2) LMKQKLQQGGVPQAIMQQQQNLLQTNQLQSSQQAAMQPSLRQTSASSTLQNQQSTQSMLQQQSQSVLRQQQQQQQQQQPQQSSIMHQQQTSMPQHPMLPTQQQQQQQQLSGQQPNSANMQHNQLIGQQNSILD
3) METKSQNPIQNSLQSTAASNSKNPQDPASQSMQSQMQNQVQQLPIPMVSNQSQVRQQLLSQNIQNSISSTGVPNSAGLSSALPPVGGMSQGTMPSVPGQNPNMQNIQNMSNVTPNAVGNSMGQGVPSNMYANSQRQIQGRQQQAVTQEQQQQNQNPQQYIYNQQLQQ
4) QQLQQQQQRIIAQQNNISNMQQQQTINQQNNLSNMHQQQSTGQPNNLPNMHQQQLGPQSNLSGFQQQQMVGMQHGNTTLQTNQQPVHMLQQSKVSVQQHQQNMSNMLPNQTQQPQSQPMQQQMMSQIQSQPGQMQQQLGMQQQVNNHPRDMQQRIQTSSPLLQQQTTIDQQKQMLQSQRVIPEVPLTSLDSSSQTGNASGGDWQEEI
5) QQYMQRQQLIQQQQQTAQQQSAQLPSQQMIQLNQMNDANDMKMRHQMGAKPGVLQPHNSSGQRQSYHHQQMKSGAPFSISSQQVHQAASPQLGHHHSPQIDQQSLLASHSKAGTPLQSANSPFIVPSPSTSMAPSPLPSDSEKMNSGVTSLSNVGNSMHHPTTAASVPNQSLA
6) VEKQIVNILNSNRPRKPVSSMQQGQLSQPHIHAMQQSQQPQPQISQMHMNEGQMNSQLQQMNVQGSLVTSQQNNMTNMQHNSLSSSVSNVSNSRQNMMDTLQPSSNIDPGQGNSLNQMQQVAMSSLQQNPVSGPQQMNINPISSQSGLTTLQSNLNPLQANSNILQPQQIKQEQQMFSSQQLKQEQQMFSNQQLKQQYQQRQ
1113
219
51
353
839
635
1176
351
217
559
1011
836










Molecular Recognition Features






MoRF SequenceStartStop




NANANA