<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00123

Description Uncharacterized protein
SequenceMSKADDLKNNGCVVALAITCSKKSKSVIKWASENLIQDEGFGQVSFKLLHVFPEITTVPTPMGNGIPIAQVRDDVAAAYRKEIEWQTNEKLLPYQNYCIRRKIQAEVVTIESDDVVNAIADEIAKSNIKKLVIGASSAGGVFSRAQTLSPRISETCPGFCTVYVIAKGKLASIRPSDPDANSIKRDEPIDNTDRFSNFSSSYTTSSQPDWTMQISSPVMYPQFVPPSPTRQFQPVSPMNNSPINSRTSFSENKSLSYYIGEHEDDGNSSSSFSDITDQKSKESSFTSMITDGHSWTTDQSSSLNASTDFSSGSQTNINFELEQLRMELRHAQGMYAMAQNEALDASRKLNGLQHQRLEETMKLNEMNLKEEEAKELAAQEKIRYEAAKKEAEYAKECADKEAALKAAAEKKATRDAKTKEKLENTLASPVHHYQEFTWEEIYSATSSLSNDLRIGMGSYGTVYKCILRHTNAAVKILHSMATSRNKQFEQELEILSTIRHPNLLTLLGACPTRGCLVYEYMENGSLEERLFRRNNSPPIPWYERYRIAREVASALIFLHNSKPKPIIHRDLKPANILLDHNFVSKIGDVGLSTMLNSDTTSAATMYKDTSPVGTLCYIDPEYQRTGLVSPKSDVYAYGMVVLQLLTAKPAIALARTVEMALDDDDVARILDKEAGSWPIEETKELAELALRCTELRHRDRPDLRTHILPTLEKLRMVSMKAHDLAVLGPTGPPNHFICPLLKDVMNDPCVAADGYTYDRKAIEEWLRENNTSPVTNLPLLSKSLIPNHSLLTAIMQQKSA
Length800
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.451
Instability index42.39
Isoelectric point5.99
Molecular weight89335.22
Publications
PubMed=24225854

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00123
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.88|      19|      39|      73|      91|       1
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   73-   91 (33.41/24.16)	DDVAAAYRKEIEWQTNEKL
  113-  131 (30.47/21.40)	DDVVNAIADEIAKSNIKKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     706.42|     233|     292|     141|     399|       2
---------------------------------------------------------------------------
  141-  399 (364.04/277.94)	VFSRAQTLSPRISETCPGFCTVY.VIAKGKLASIRPSDPDANSikRDEpidntdRFSNFSSSYTTSSQPD.WTMQISSP....VMYPQFVPPS.PTRQFQpvspMNNS.PINSRTSFSENKSL.SYYIGEHeddgNSSSSFSDITDQKSK....ESSFTSMITD.GHS..WTTDQSSSLNASTDFSS.GSQTNINFELEQLRMeLRHAQGMYA..MAQNEALDASRKLNglqhqrLEETMklnEMNLKEEEAKELAAQEKIRY..EAAKKEAEYAKECAD
  441-  694 (342.38/208.60)	IYSATSSLSNDLRIGMGSYGTVYkCILRHTNAAVKILHSMATS..RNK......QFEQELEILSTIRHPNlLTLLGACPtrgcLVYEYMENGSlEERLFR....RNNSpPIPWYERYRIAREVaSALIFLH....NSKPKPIIHRDLKPAnillDHNFVSKIGDvGLStmLNSDTTSAATMYKDTSPvGTLCYIDPEYQRTGL.VSPKSDVYAygMVVLQLLTAKPAIA......LARTV...EMALDDDDVARILDKEAGSWpiEETKELAELALRCTE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00123 with Med32 domain of Kingdom Viridiplantae
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