<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00119

Description Uncharacterized protein
SequenceMAANTPAALLDKWRDYFRGANSDIFSIIEHAIIVAASDFPYDFKLNRDRIAEMLFTCKSTKCFGCDRIELSVPPCAAVGSTKSGGGGDCDDNQLKNDDYHREVMVMNVNQISDNSYGDDDVVLLTDLIDEENQLFEEVVRIKEIIERSEQESDEALFDSLRRLQLMRLSVEILKVTGIGKTVNSLRKHKSLEIRNLVKTLVKDWKSMVDDAWADAKAATSDVTTECGKTSAVQQEEEEAGLPSPPLDEGAFFATPTSMEFSKFFDGIDDNGNPQNSGEFDKNRENGRERSIEESVLNKQVRPVKPSGPHNGESGPGRPKVALQSKVQQKSDGDAVQKKPVPNHQQAKLNFSNEDSVQTKLEGAKRKLQERYMEIANAKKQRTIQVVELNDLPKQNLQKKNQHTRPRNNRLRNC
Length413
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.06
Grand average of hydropathy-0.757
Instability index44.59
Isoelectric point5.53
Molecular weight46388.46
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00119
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.41|      15|      15|     119|     133|       1
---------------------------------------------------------------------------
  119-  133 (23.48/16.77)	DDVVLLTDLIDEENQ
  136-  150 (22.93/16.22)	EEVVRIKEIIERSEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.44|      12|      19|     327|     338|       2
---------------------------------------------------------------------------
  327-  338 (21.61/12.73)	QQK...SDGDAVQKK
  345-  359 (15.83/ 7.63)	QAKlnfSNEDSVQTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      17|      19|      48|      64|       3
---------------------------------------------------------------------------
   48-   64 (33.35/20.53)	DRIAEMLFTCK...STKCFG
   66-   85 (26.89/15.43)	DRIELSVPPCAavgSTKSGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00119 with Med26 domain of Kingdom Viridiplantae
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