<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00116

Description Uncharacterized protein
SequenceMTRAETGGGKVHVAVGKSVEKTVALLTWTFSMFPGQEICLLHVHRPCHLIPTLLGKLPASGANPKMVAAFRNEEREDTMKLLSTYFITCTKSKVKASVITIEADDVQRGILNLVNRHGVRKLVVGAIPDFMKGKKSSCKACLVAKIAPSYCEMWFVNNGKLIWTRQASDVLNVHPLSCQLAAGSSNSCRNQVKALETAHARELKLRIEAENALWNTINEQEKIIKEREGITDKLQKTRESNSLLERRTQEANRRCEEVSRELKLIQSSIAELRKEKQKLKGEKMEATRLLDCGPVGDIYEFREFSLSDIEGATCNFSESFKIGKGGCGIVYKGEMFDKTVAIKKLHSYDVQRQMEFHKVVQVLGKLRHPNLVELIGVCQESLLLIYDYMPCGSLHNHLSSRNDVNALSWKTRTRIVANIASGLLFLHSFGPKKIVHGNLKPENILLDSQNRCRISDYVDHMLIDTSQTLRCPSFRHLSGGACLYADPESSRTGEVNQKSDIYSFGVIILQLVTGRSDGGLVGYVRRVFSSSDVADILDSSAGDWSVYVGRRLVELGLQCCESNGRDRPEITPSLVKELQCMPFLEEQTVPSFFLCPILREIMHDPQVAADGFTYEGEAMRGWLGNGHVNSPMTNLTLSHFDLTPNHSLRLAIKDWLANLEIDSFDFSM
Length668
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.228
Instability index40.81
Isoelectric point8.36
Molecular weight74765.25
Publications
PubMed=24225854

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00116
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     330.45|     112|     311|       8|     139|       1
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    8-  139 (157.32/174.36)	GGKVHVAVGKSVEKTVALltWTFSMFPGQEicllhvHRPCHLIPTLLGKLPasgaNPKMVAAFrnEEREDTMKLLSTYfITC........TKSKVKA.......SVITieadDVQRGILnLVNRHGVRKLVVGAI.P.DFMKGKKSSCK
  325-  453 (173.13/129.09)	GGCGIVYKGEMFDKTVAI..KKLHSYDVQR......QMEFHKVVQVLGKLR....HPNLVELI..GVCQESLLLIYDY.MPCgslhnhlsSRNDVNAlswktrtRIVA....NIASGLL.FLHSFGPKKIVHGNLkPeNILLDSQNRCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      11|      26|     516|     526|       2
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  516-  526 (20.47/11.53)	SDGGLVGYVRR
  540-  550 (21.77/12.67)	SAGDWSVYVGR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.96|      11|      26|     143|     153|       3
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  143-  153 (20.11/12.62)	VAKIAPSYCEM
  170-  180 (19.84/12.36)	VLNVHPLSCQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.02|      23|      26|     228|     250|       4
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  228-  250 (35.41/28.95)	EGITDKLQKTRESNSLLERRTQE
  256-  278 (33.61/27.08)	EEVSRELKLIQSSIAELRKEKQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00116 with Med32 domain of Kingdom Viridiplantae
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