<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00113

Description Uncharacterized protein
SequenceMGEKFNSKVEGLYELPPPPYTVVGLAVSGSEKSKTIIKWALEKFVPEGVVHFKLLHVRPVVSRIPTPMGNYIQISQVRDDVAAAFRKEIQSQVSEKLLHFKKMFDQKRVHVEIVQIENNDVVTAISANIQKHRIDRLVIGASSRSIFSRTRTLSSKISESCPSFCTVYVVSKGKLSSLRPSDSEGNISFRDDSSETTCSSSDNNFSSQTSSSRTDCTTDQDSFAHFRTASMPLQRFQALSNINQTLHKKMPSTVIAPHSRNLTLDNVADNFPSGSDVNYYTTAKNNFHSFTSSSADDNNPSSDQASTSDNTPTKNQADVNFELEKMRVELRHIRGMYAMAQGEAIDTSRKLSELQKRRLEEETNLRQIRFKEEEAKELADKEKTRYEDAKKEAEFVNECAEREAEERRDAEIWAARETKEKEDLENALNGSSSHYRKFTWEEIVDATSSFSDDRKIGMGAYGTVYRSTFHHTTAAVKILHSKDAGRNKQFQQEVDILSKIRHPHLLILIGACIDHSCLVYEFMENGSLEDRLFRKTNKKNTPPLLWFDRFRIAWEVASALSFLHNAEPKGIVHRDLKPANILLGINNVSKIGDVGLSTVVNKDSISVSGLVGTLSYIDPEYQRTGVVAPESDVYAFGMVVLQLITGKPAIALTHKVETAVANDRLTELLDKNGGDWPIEETKSLALIALKCTELRRTDRPEMKGEVLPVLERLKDFAEKTRNVALVSAPKQFICPISNVVMSDPCVAGDGYTYDRGAIEEWIKAKDTSPVTDLQLPHKYLIPNYTLLSAIMEWNS
Length795
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.475
Instability index44.84
Isoelectric point6.44
Molecular weight89333.85
Publications
PubMed=24225854

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00113
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.50|      37|      42|      50|      90|       1
---------------------------------------------------------------------------
   50-   90 (56.97/51.94)	VHFKLLHVRPVVSRIPTpmgnYIQISQVR.DDVAAAFRKEIQ
   93-  130 (56.53/39.49)	VSEKLLHFKKMFDQKRV....HVEIVQIEnNDVVTAISANIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.05|      13|      34|     322|     334|       2
---------------------------------------------------------------------------
  322-  334 (24.20/17.30)	ELEKMRVE....LRHIR
  353-  369 (17.85/10.82)	ELQKRRLEeetnLRQIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.27|      21|      47|     251|     271|       3
---------------------------------------------------------------------------
  232-  246 (15.96/ 6.62)	......PLQRFQALSNINQ.TL
  251-  271 (37.55/25.50)	PSTVIAPHSRNLTLDNVAD.NF
  300-  321 (31.76/20.44)	PSSDQASTSDNTPTKNQADvNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.75|      27|      47|     587|     613|       4
---------------------------------------------------------------------------
  587-  613 (42.83/30.65)	NVSKIGDVGLSTVVNKDSISVSGLVGT
  632-  658 (44.92/32.48)	DVYAFGMVVLQLITGKPAIALTHKVET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.16|      22|      49|     142|     166|       5
---------------------------------------------------------------------------
  142-  163 (34.93/14.85)	SSRSIFSRTRTLSSKISESCPS
  194-  215 (39.23/16.77)	SETTCSSSDNNFSSQTSSSRTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.33|      26|      28|     372|     397|       6
---------------------------------------------------------------------------
  372-  397 (40.91/25.39)	EEEAKELADKEKTRYEDAKKEAEFVN
  401-  426 (42.42/26.58)	EREAEERRDAEIWAARETKEKEDLEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00113 with Med32 domain of Kingdom Viridiplantae
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