<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00111

Description Uncharacterized protein (Fragment)
SequenceVPESTPQMMSTNTVDWVDQACHKILQMKEHYLAEVTKIYHKSTEAIRHATTTEQLSKGQYAKESSQRMIKFLHCTRLDISRLPKEKVCNYISRCVKFINTARAWFPEATPHMQQRLNPETPILNPSSSTMVNSVQYSPMRSAPPQMWAPHGNNLSKMLHSSNNNNSSNNNNNNLAIASQKIAMRNMCNSLDYSVGATNMQQDLSSSAARMKTKQPMQQLRRFVGLNQKTVSPQNSQSSSKLSISATPSTCSSPLAIPSPLSTPLMADSGKSPFSVEESSKFPDVSPTPLKSVSTGALTAALSEIKGVVALNDAIGGQLVLGQPMKVIFHDLGDDISNFVNGNSRLVDKTCTEYSKMKRKLDGVASNEMPNETGFFSSENRMIKRQRKELVMDVLMEEKNEIHQTLIEMVVDVKNAGDEGGAHVRFSYTPVGFSRNIPHLLLDLIVTADYPNSSPTVSESMPIGCGDECMWKKAKSNFGLSIKKISEPVSIKEMARAWDFCAREVFHEFAKKTGGVIQDIEDSNKTRVYVYTFSFFRYILKSLNRY
Length545
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.451
Instability index49.09
Isoelectric point9.08
Molecular weight60782.72
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00111
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.21|      40|     106|     110|     149|       1
---------------------------------------------------------------------------
  104-  146 (72.72/37.40)	WFPeatP...HMQQR....LNPET..PILNPSSST................MVNSVQYS........PMR.SAPPQM
  147-  210 (39.82/17.53)	WAP....hgnNLSKM....LHSSN..N..NNSSNNnnnnlaiasqkiamrnMCNSLDYSvgatnmqqDLS.SSAARM
  211-  256 (40.66/18.04)	KTK..qP...MQQLRrfvgLNQKTvsPQNSQSSSK................L..SISAT........PSTcSSPLAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00111 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATPHMQQRLNPETPILNPSSSTMVNSVQYSPMRSAPPQMWAPHGNNLSKMLHSSNNNNSSNNNNNNLAIAS
2) NMQQDLSSSAARMKTKQPMQQLRRFVGLNQKTVSPQNSQSSSKLSIS
108
198
178
244










Molecular Recognition Features






MoRF SequenceStartStop




NANANA