<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00104

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMATGQDTSLEEILWRSPPHVQMMGGFLHSNNILFYFAESPFFDATSNNASLAIQANYNEAFRHFVETREAFEGRLSTMQGLEFVVAYDPLQAAAQSETSFAHEPSNIWIIRKQARRKRGGLDDEVVVLSTFFVMGDCIYMAPSVASVIGNRILSAVTSLTSLLKTASTLPSFTPSYGHTYMPPTIKSSETSQPGIQSQTSKEDSTPMPEGESQSKTSLQGTGPSNIGSTLQDTRTLAESFNLLSRYGDEFMDESPLVGEPGSFILSRSGDVDKTKQGLQLPTATAGTATNAPTRVGTPQVRVETPGKSDKGGSTPVADEKLRKKKSKIGV
Length330
PositionHead
OrganismAspergillus ruber CBS 135680
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.08
Grand average of hydropathy-0.381
Instability index58.21
Isoelectric point5.64
Molecular weight35706.58
Publications
PubMed=24811710

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00104
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.72|      77|     116|      89|     173|       1
---------------------------------------------------------------------------
   89-  173 (114.43/85.52)	PL.QAAAQSETSFAHE.PSNIWIIRKQARRkrggLDDEVVVLSTFfvmGDCIYMAPSVASVIGNRILSAVTSLTSlLKTASTLPSFT
  206-  284 (123.29/71.66)	PMpEGESQSKTSLQGTgPSNIGSTLQDTRT....LAESFNLLSRY...GDEFMDESPLVGEPGSFILSRSGDVDK.TKQGLQLPTAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00104 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDEFMDESPLVGEPGSFILSRSGDVDKTKQGLQLPTATAGTATNAPTRVGTPQVRVETPGKSDKGGSTPVADEKLRKKK
2) HTYMPPTIKSSETSQPGIQSQTSKEDSTPMPEGESQSKTSLQGTGPSNIGSTLQDTR
247
178
325
234










Molecular Recognition Features






MoRF SequenceStartStop




1) KGGSTPVADEKLRKKKSKIGV
2) TRVGTPQVRVETPGK
310
293
330
307