<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00092
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MMDHDINVDDLFGEPGSLELGLSPTAPKGLAQRLDEMRLLGCCQKISWSRLGCIAYISRDGLAVNVRYLHCQPSDGRWRLSEDTPLFPVTEAHGNHPLVHICWNESGLELAVVDSSGRVSIYSISIALNSIAGQRQAAFDPDDEINQVVGMMWLNTQRSVHAFLQAAKVNGRWAYAPFRRRPIGPFHPANKAALICVTRSGLIKLLYQNPDSRWAEISAELKNTSYSDRLLTHASLVATQAGIIVVTHSVCQKICVYRVHVSWNPPQWDPSSPKQSNLFPVPSFRFAHGNVETPSGFWNAYRSTGENEEAPLSTNSIYALTHLEIIPGAADNPTGSTANPWILAVYSNPVPATPDHTEQNGSASIIVRWQLEAASQNLHPKFDEVASKKNHNAQAKPKMELRRLEDIHFDKYVISVDQAEHGTVLAITYDDSSITFYDPKTMAIFNGTDDNSTVTCLTQAGFHSPPEVSGLQISFSPSACGAVMLDSEGQMQLRLMEHSYGAENGLFDESKFSAAIAALTLAFCRGCGSDINTDDILMLVMRQLSSEAQTAFLNEIYRALPINCNFTVDQDKLMNHPYIPRCLSLQAALGFRDRYKPRIFTSAVPWAILHLRHGAVLFAYFFQYIKGTQTDPHDSDVLRMVLGNTRWVLDFSQYILNEVFDLADEFESVLSDQEAFTQKLKTTTSLPLIILLSSMSRTFLRFICRGLRGVHSGYNPSAANLAGDSRIYYSETCHLLDTSPVRIDVYEKFLAGVDSAVRHAYHGAGFGDTERPGPEKELLVNARIPPVLVNAVSAIFRSVVPAVRGEVDRLAVYLGDYTWLGVGDDKRTEVYRRTRDVDILKKIPLRVIVPDAGSRTNTTTPTNDDNKAGAEQRIRRCIRCCEVSSDTHPPRSLPAFQMIARLGLLRSCICGGMWALESRLPGGQLDGSMGSSTSPPAPGLQTESRTPGLMQGS |
Length | 953 |
Position | Tail |
Organism | Aspergillus ruber CBS 135680 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.195 |
Instability index | 39.68 |
Isoelectric point | 6.17 |
Molecular weight | 105351.32 |
Publications | PubMed=24811710
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP00092
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.31| 20| 43| 885| 906| 1
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885- 906 (33.22/25.26) SDTHPPrsLPAFQMIARL.GLLR
931- 951 (33.09/18.59) SSTSPP..APGLQTESRTpGLMQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 218.45| 52| 206| 43| 98| 2
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43- 97 (89.27/59.52) CQKISWSRLgcIAYISRDGLaVNVRYLHCQPSDGRWRLS..EDTPL..FPVTE...AHGNHP
163- 191 (27.27/ 9.56) .........................FLQAAKVNGRWAYA.....PFrrRPIGP...FHPANK
194- 230 (49.79/24.76) ...........LICVTRSGL.IKLLY...QNPDSRW..A..EISAE..LKNT....SYSDRL
251- 290 (52.12/20.56) CQKICVYRV..................HVSWNPPQWDPSspKQSNL..FPVPSfrfAHGN..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.41| 36| 43| 723| 758| 3
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723- 758 (62.00/46.66) GDSRIYYSETCHLLDT..SPVRIDVYEKFLAGVDSAVR
767- 804 (55.41/40.80) GDTERPGPEKELLVNAriPPVLVNAVSAIFRSVVPAVR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.85| 18| 211| 408| 425| 5
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408- 425 (31.92/23.51) HFDKYVISVDQAEHGT.VL
620- 638 (28.93/20.57) YFFQYIKGTQTDPHDSdVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.75| 31| 40| 518| 552| 7
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518- 552 (46.91/36.04) ALTLafcrGCGSDINTDDIL..MLVMRQLSSEAQTAF
559- 591 (51.84/29.39) ALPI....NCNFTVDQDKLMnhPYIPRCLSLQAALGF
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