<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00071

Description Uncharacterized protein
SequenceMSAPAAQPTSSAEGQEEKDKSLLLRESDAAPERPLDIERLRRCIIEFVHENFLEVVFWQMQTANKDFDEMLGVQAVVLLNKMDEKERGVLLMELVTIVHEASLQWRQEYERVVDAILYYAHAAGVLSINMCVEGLALTADFTLRTIMDPQKWTFIEENIPLMDYKGVRSLFNHRAPYLPYKAELRAPQTYLLYTVIRQPRGKEVLSGLLRQVTHGRTQWDEILSVLISETMAEVQKLPEEVEIPRYQWENLMSIIMYGITQKHINLSRLLSLLSNVLVKTGYRRARDEVMWIMLQIAGTFQPHLQKEQVEEMARLYNLLFSDDVVWTGASDHPSQLVRFLAAACMWNILDGSEGLPPPSECLATQIEFVRSNTGPPDEAMQAVLDNAFRHESPISRNVHAIFQQRLDGQPTDEPHILPYGRAANNKLDAFDMQFLDALTLRAKINLLISTCFVSLHKVDRLPSPACVETCARILTSIEFDYGLTNFIAILNRSITAALSPAPADGLNHKDQCYMLLDLLCYRLPSIPMNFRAAMSHTHDPTPAGLRLCMTIHSAMAQQHVASNHGLYSAMEHTLMRQWAWNLLPDTISLAHLFVDNAFGNTLLNLNSWLVYNPMDNSRAGRLVICPELSSLPLTAQRTAITLEEDPAKAEAFQREVHTDFMQMRGQPEMSWMEYMSMPSRQPTILCVIFRYLIESPPEHQMLSPVIYQILDRQTCREHVLAVNALTDYIISQCSAEKNSEEFLPMMIRVLNMMVFHRHVMTFDRLLLSLVLHPATDHASQIAMVIVQALLNCTEINERIDFYCRYIPKRDVDAPEHFRRLAEYHRKFPEMTFAEMANRPPMMAEMVNPRAHYPIYYGSLIERLLPILDFTLARALELQVDNIFSTILTTCGPIYKFHPYPITFLYTILFCMHEQLGHHPRARQFVLAILCQGDQSSLTQSFINDNHQRVYSFEELVYELADRIITCSEFILTPPSYVAPDWRFAEYPPAAQALYLACIELLASPHTPEHIVPAMINLLVSSRAQPPRPYLMLNAIALLLTALPEAYCRVLQNEFLAVIDSGVLAEMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLTSLSKLISTFAGEVCSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSILYTKIGDITERYGDILHGDELCDLLYYFKYMFVGDFLRKEAEAAFPRFPPRMRERLKFYTSFSSNKEKDEDCAAKVSSVSRPDLATLLKTSRANAPDRPADTHVTSSAGDH
Length1271
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.09
Grand average of hydropathy-0.088
Instability index49.90
Isoelectric point5.58
Molecular weight145671.47
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00071
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.75|      18|      18|     528|     545|       2
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  528-  545 (34.20/22.91)	MNFRAAMSHTHDPTPAGL
  549-  566 (32.56/21.44)	MTIHSAMAQQHVASNHGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.07|      15|      69|     213|     227|       3
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  213-  227 (26.70/16.76)	THGRTQWDEILSVLI
  242-  256 (24.62/14.84)	EIPRYQWENLMSIIM
  280-  294 (24.75/14.97)	TGYRRARDEVMWIML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.80|      16|     436|     318|     336|       4
---------------------------------------------------------------------------
  318-  333 (28.93/19.41)	LLFSDDVVWT...GASDHP
  338-  356 (24.88/ 8.50)	RFLAAACMWNildGSEGLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     587.67|     162|     671|       1|     184|       6
---------------------------------------------------------------------------
   23-  184 (275.13/158.92)	LLRESDAAPER....P........LDIERLRR..CIIEFVHENFLEVVFWQMQTANKDFDEMLGVQAVVLLNKMDEKERGV.....LLME....LVTIVHEASLQWRQEYERVVDAILYYAHAAGVLSINMC..VEGLALTADFTLRTI.MDPQK....WTFIE.ENIPLMDYKGVRSLFNHRAPYLPYKAEL
  619-  674 (36.56/40.88)	...........................................................................................................................AGRLVICPE..LSSLPLTAQRTAITLeEDPAK....AEAFQ.REVH.TDFMQMRG..QPEMSWMEY....
  693-  859 (217.81/122.49)	I....ESPPEHqmlsP........VIYQILDRqtCREHVLAVNALTDYIISQCSAEKNSEEFLPMMIRVL.NMM.VFHRHVmtfdrLLLS....L..VLHPATDHASQIAMVIVQALLNCTEINERIDF.YCryIPKRDVDAPEHFRRL.AEYHRkfpeMTFAEmANRPPM....MAEMVNPRAHYPIYYGSL
 1017- 1097 (58.18/23.57)	LLVSSRAQPPR....PylmlnaiaLLLTALPE..AYCRVLQNEFLAVIDSGV.LAEMTFEE.......IVFDEFE..ERQL.....LQMAsrplIVNVVAQA...........................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      17|      19|     897|     914|       9
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  897-  914 (30.78/24.37)	HPYPITFLYTILfCMHEQ
  918-  934 (32.39/19.99)	HPRARQFVLAIL.CQGDQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00071 with Med23 domain of Kingdom Metazoa
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