<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00068

Description Uncharacterized protein
SequenceMSAPAAQPTSSAEGQEEKDKSLLLRESDAAPERPLDIERLRRCIIEFVHENFLEVVFWQMQTANKDFDEMLGVQAVVLLNKMDEKERGVLLMELVTIVHEASLQWRQEYERVVDAILYYAHAAGVLSINMCVEGLALTADFTLRTIMDPQKWTFIEENIPLMDYKGVRSLFNHRAPYLPYKAELRAPQTYLLYTVIRQPRGKEVLSGLLRQVTHGRTQWDEILSVLISETMAEVQKLPEEVEIPRYQWENLMSIIMYGITQKHINLSRLLSLLSNVLVKTGYRRARDEVMWIMLQIAGTFQPHLQKEQVEEMARLYNLLFSDDVVWTGASDHPSQLVRFLAAACMWNILDGSEGLPPPSECLATQIEFVRSNTGPPDEAMQAVLDNAFRHESPISRNVHAIFQQRLDGQPTDEPHILPYGRAANNKLDAFDMQFLDALTLRAKINLLISTCFVSLHKVDRLPSPACVETCARILTSIEFDYGLTNFIAILNRSITAALSPAPADGLNHKDQCYMLLDLLCYRLPSIPMNFRAAMSHTHDPTPAGLRLCMTIHSAMAQQHVASNHGLYSAMEHTLMRQWAWNLLPDTISLAHLFVDNAFGNTLLNLNSWLVYNPMDNSRAGRLVICPEIVRMLLITMMRAMKIMGIESDPELMRINQVYTWAPSQSIQLSSLPLTAQRTAITLEEDPAKAEAFQREVHTDFMQMRGQPEMSWMEYMSMPSRQPTILCVIFRYLIESPPEHQMLSPVIYQILDRQTCREHVLAVNALTDYIISQCSAEKNSEEFLPMMIRVLNMMVFHRHVMTFDRLLLSLVLHPATDHASQIAMVIVQALLNCTEINERIDFYCRYIPKRDVDAPEHFRRLAEYHRKFPEMTFAEMANRPPMMAEMVNPRAHYPIYYGSLIERLLPILDFTLARALELQVDNIFSTILTTCGPIYKFHPYPITFLYTILFCMHEQLGHHPRARQFVLAILCQGDQSSLTQSFINDNHQRVYSFEELVYELADRIITCSEFILTPPSYVAPDWRFAEYPPAAQALYLACIELLASPHTPEHIVPAMINLLVSSRAQPPRPYLMLNAIALLLTALPEAYCRVLQNEFLAVIDSGVLAEMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLTSLSKLISTFAGEVCSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSILYTKIGDITERYGDILHGDELCDLLYYFKYMFVGDFLRKEAEAAFPRFPPRMRERLKFYTSFSSNKEKDEDCAAKVSSVSRPDLATLLKTSRANAPDRPADTHVTSSAGDH
Length1311
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.09
Grand average of hydropathy-0.077
Instability index49.42
Isoelectric point5.61
Molecular weight150350.12
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.75|      18|      18|     528|     545|       1
---------------------------------------------------------------------------
  528-  545 (34.20/21.74)	MNFRAAMSHTHDPTPAGL
  549-  566 (32.56/20.36)	MTIHSAMAQQHVASNHGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     479.83|     189|     476|     123|     336|       2
---------------------------------------------------------------------------
  123-  197 (56.58/45.56)	.....................................................................................................................................................AGV.....................................................................................................................................................................................................................................................................................................................................lsinmcvegLALTADFTLRTI.MDPQKWTFIE.ENIPLMDYKGVRSLFNHRAPYLPYKAELRAP..QTYLLYTVIR
  198-  336 (147.49/139.87)	QPRGKEVLSGLLRQVTHGRTQWDEILSVlisETMAE..VQKLPEEVEIPRYqWENLMSIIMYGITQKHI.NLSRLlsLLSNVLvktgyRRARDEVMWIMLQIAgtfQPHLQKEQVEEMARLYNLLFSDDVVwtGASDHPSQL...........................................................................................................................................................................................................................................................................................................................................................................................................................
  671-  730 (36.43/10.14)	........................................................................................................................................................vrflaaacmwnildgseglpppseclatqiefvrsntgppdeamqavldnafrhespisrnvhaifqqrldgqptdephilpygraannkldafdmqfldaltlrakinllistcfvslhkvdrlpspacvetcariltsiefdygltnfiailnrsitaalspapadglnhkdqcymlldllcyrlpsipmnfraamshthdptpaglrlcmtihsamaqqhvasnhglysamehtlmrqwawnllpdtislahlfvdnafgntllnlnswlvynpmdnsragrlvicpeivrmllitmmramkimgiesdpelmrinqvytwapsqsiqlssLPLTAQRTAITLeEDPAKAEAFQ.REVH.TDFMQMRG.....QPEMSWMEYMSMPsrQPTILCVIFR
  735-  899 (239.33/164.48)	SPPEHQMLSPVIYQILDRQTCREHVLAV...NALTDyiISQCSAEKNSEEF.LPMMIRVLNMMVFHRHVmTFDRL..LLSLVL.....HPATDHASQIAMVIV...QALLNCTEINERIDFYCRYIPKRDV..DAPEHFRRLaeyhrkfPEM.................................................................................................................................................................................................................................................................................................................................................................TFAEmANRPPM....MAEMVNPRAHYPIYYGSL...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.88|      23|     477|       2|      24|       3
---------------------------------------------------------------------------
    2-   24 (38.02/29.00)	SAPAAQPTSSAEGQEEKDKSLLL
  493-  515 (41.86/32.84)	SITAALSPAPADGLNHKDQCYML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      17|      18|     937|     954|       5
---------------------------------------------------------------------------
  937-  954 (30.78/23.22)	HPYPITFLYTILfCMHEQ
  958-  974 (32.39/19.04)	HPRARQFVLAIL.CQGDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.96|      17|      21|     375|     391|       6
---------------------------------------------------------------------------
  357-  373 (26.52/16.03)	PPSECLATQ....IEFVRSNT
  375-  391 (28.60/17.91)	PPDEAMQAV....LDNAFRHE
  393-  413 (21.84/11.79)	PISRNVHAIfqqrLDGQPTDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.76|      12|      17|    1055|    1069|       7
---------------------------------------------------------------------------
 1055- 1069 (16.89/16.30)	INLLVSSRaqpPRPY
 1075- 1086 (19.87/ 9.34)	IALLLTAL...PEAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.62|      13|      17|     581|     596|       8
---------------------------------------------------------------------------
  581-  596 (17.28/21.08)	NLLpdtISLAHLFV....DN
  600-  616 (18.34/10.22)	NTL...LNLNSWLVynpmDN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00068 with Med23 domain of Kingdom Metazoa
Unable to open file!