<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00065

Description Uncharacterized protein
SequenceMSAPAAQPTSSAEGQEEKDKSLLLRESDAAPERPLDIERLRRCIIEFVHENFLEVVFWQMQTANKDFDEMLGVQAVVLLNKMDEKERGVLLMELVTIVHEASLQWRQEYERVVDAILYYAHAAGVLSINMCVEGLALTADFTLRTIMDPQKWTFIEENIPLMDYKGVRSLFNHRAPYLPYKAELRAPQTYLLYTVIRQPRGKEVLSGLLRQVTHGRTQWDEILSVLISETMAEVQKLPEEVEIPRYQWENLMSIIMYGITQKHINLSRLLSLLSNVLVKTGYRRARDEVMWIMLQIAGTFQPHLQKEQVEEMARLYNLLFSDDVVWTGASDHPSQLVRFLAAACMWNILDGSEGLPPPSECLATQIEFVRSNTGPPDEAMQAVLDNAFRHESPISRNVHAIFQQRLDGQPTDEPHILPYGRAANNKLDAFDMQFLDALTLRAKINLLISTCFVSLHKVDRLPSPACVETCARILTSIEFDYGLTNFIAILNRSITAALSPAPADGLNHKDQCYMLLDLLCYRLPSIPMNFRAAMSHTHDPTPAGLRLCMTIHSAMAQQHVASNHGLYSAMEHTLMRQWAWNLLPDTISLAHLFVDNAFGNTLLNLNSWLVYNPMDNSRAGRLVICPELSSLPLTAQRTAITLEEDPAKAEAFQVLYFSLFQREVHTDFMQMRGQPEMSWMEYMSMPSRQPTILCVIFRYLIESPPEHQMLSPVIYQILDRQTCREHVLAVNALTDYIISQCSAEKNSEEFLPMMIRVLNMMVFHRHVMTFDRLLLSLVLHPATDHASQIAMVIVQALLNCTEINERIDFYCRYIPKRDVDAPEHFRRLAEYHRKFPEMTFAEMANRPPMMAEMVNPRAHYPIYYGSLIERLLPILDFTLARALELQVDNIFSTILTTCGPIYKFHPYPITFLYTILFCMHEQLGHHPRARQFVLAILCQGDQSSLTQSFINDNHQRVYSFEELVYELADRIITCSEFILTPPSYVAPDWRFAEYPPAAQALYLACIELLASPHTPEHIVPAMINLLVSSRAQPPRPYLMLNAIALLLTALPEAYCRVLQNEFLAVIDSGVLAEMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLTSLSKLISTFAGEVCSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSILYTKIGDITERYGDILHGDELCDLLYYFKYMFVGDFLRKEAEAAFPRFPPRMRERLKFYTSFSSNKEKDEDCAAKVSSVSRPDLATLLKTSRANAPDRPADTHVTSSAGDH
Length1279
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.09
Grand average of hydropathy-0.078
Instability index49.59
Isoelectric point5.58
Molecular weight146669.64
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00065
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.75|      18|      18|     528|     545|       2
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  528-  545 (34.20/21.45)	MNFRAAMSHTHDPTPAGL
  549-  566 (32.56/20.07)	MTIHSAMAQQHVASNHGL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.18|      17|      18|     905|     922|       3
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  905-  922 (30.78/23.36)	HPYPITFLYTILfCMHEQ
  926-  942 (32.39/19.14)	HPRARQFVLAIL.CQGDQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     392.39|     126|     680|     373|     521|       6
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  382-  521 (184.69/176.19)	AVLDNAFRHESPISRNVHAIFQQRLDGQPTDEPHIL.....PYGRAAN.NKLDAFDMQFLDALTLRAKINlliSTCFVSLhkvdRLPSPaCVETCARILTSIEFDYGLtNFIAILNRSItAALSPAPADGLnHKDQcymLLDLLCY
 1064- 1195 (207.70/131.69)	AVIDSGVLAEMTFEEIVFDEFEERQLLQMASRPLIVnvvaqAYWYHSNlTSLSKLISTFAGEVCSRANTE...NDLWYAL....RLVVP.LLQRCYDWREKVKHEESL.KVVSILYTKI.GDITERYGDIL.HGDE...LCDLLYY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.18|      11|      18|     806|     816|       7
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  806-  816 (22.44/13.56)	RIDFYCRYIPK
  827-  837 (20.75/11.95)	RLAEYHRKFPE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.76|      12|      17|    1023|    1037|      12
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 1023- 1037 (16.89/17.42)	INLLVSSRaqpPRPY
 1043- 1054 (19.87/10.01)	IALLLTAL...PEAY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.16|      34|      69|      16|      49|      13
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   16-   49 (57.10/35.00)	EEKDKSLLLRE.....SDAAPERPLDIERLRRCIIEFVH
   83-  121 (53.06/32.00)	DEKERGVLLMElvtivHEASLQWRQEYERVVDAILYYAH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.68|      15|     249|     714|     728|      14
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  714-  728 (28.67/20.48)	IYQILDR.QTCREHVL
  964-  979 (23.01/14.81)	VYELADRiITCSEFIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.22|      15|      67|     213|     227|      15
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  213-  227 (26.40/13.83)	THGRTQWDEILSVLI
  242-  256 (25.33/13.00)	EIPRYQWENLMSIIM
  280-  294 (24.50/12.35)	TGYRRARDEVMWIML
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.48|      21|     290|     582|     602|      16
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  582-  602 (38.86/21.57)	LLP..D.TISLA.HLFVDNAFGNTL
  871-  895 (23.62/10.47)	LLPilDfTLARAlELQVDNIFSTIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00065 with Med23 domain of Kingdom Metazoa
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