<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00060

Description Uncharacterized protein
SequenceMVAISRPAWISDVVCRLWGDRGSLFDLSSQLREQLSTIKPQSAELRLLAQEFFQTATMTSHPDQRMLECIKMLAHSELISWTDFLRTVTGFAHFQKSRCVVALCALLESELPHLQCPFSHISDCLAMTEAVIDVFVWIVEGILASRELDDFEVVDVEGTLFQTFTVFLSDPFVFRLMSLATKKYGGVIKSSIINRLDELQCQDGVTLNYEELLSAFQRIFDPPKYESSELTIKYNFRRSGIRSLTAVFSCFRVLAAVEEVADTMLLFGQINAISHHEIVSDMLHASFMILLEEQETRDNCKSSIEMFFYVKMPRVWAAMIKLGMQPESVVRGVQHMVSECRQVIDNVDSIVKDNTIRAIVRQLISERVMSDADGDKLIAQRNEQLKMIQGLACLTRDDVQRQTQVAVVLSAVQARHVIDKLWNMQEKLMTVLTRLIGSGGYAFDAFCSSYGLEGTLAEMSSKLASLNLLSESPSNVCVDRNMTFDLSFTMLTRIVYKYSNLTLDELVRDPRGGPDNTACAFYQWSSRYVKRISCHSQDHADSDLPIIPPELKAAYKDRVLRLKERQLFWDPHTCNYGQLLHEMPIVGEVILDCFKERKHIEEDVSRIFAAFRKANCLLVCIIQWLECQVPSEARRQMARCIKMVLEESVPDEKEEKDRWLFTRMVCRRQLDEMCECDSVIPPMTITLMAIAKRSFPTLHRRQVPDKEMLKKAWLYAQRQNWASPNVLHLIDHCNRAGAHKSWFEFYMHHMMKLRCPDVMNRAIETICACLLLEPQETLITACVLMVDFMMDKKSQVQFEVPYVIPLVKLLTQVMLMSVWIIDREYKKVNAWRSGEPRQKRAKIANDSQIHPSIKILQETIEVAVNKFVKESSQGSLYQPISSVCHIVRMIAGAPESEAKQLLLPYLKHLLFFQLARLEPGSISFELFATFCDPANEDHDLEKLKFLCLLRKSGGL
Length955
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.08
Grand average of hydropathy-0.041
Instability index50.23
Isoelectric point6.30
Molecular weight109604.45
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00060
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.28|      12|     457|      14|      28|       3
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   14-   28 (17.72/20.73)	VCRlwgDRGSLFDLS
  476-  487 (21.57/12.27)	VCV...DRNMTFDLS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.38|      38|     195|      45|      86|       5
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   45-   82 (67.78/45.80)	LRLLAQEFFQTATMTSHPDQRMLECIKM.LAHS......ELISWT
  631-  660 (18.16/ 6.07)	...............SEARRQMARCIKMvLEESvpdekeEKDRWL
  687-  721 (55.44/30.02)	LMAIAKRSFPTLHRRQVPDKEMLKKAWL.YAQR......Q..NW.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.78|      37|     479|     432|     472|       6
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  432-  472 (59.02/51.24)	LTRL.IGSGGYA.FDAFCSSYGLEGTLaemsSKLASLNLLSES
  914-  952 (57.76/39.81)	LARLePGSISFElFATFCDPANEDHDL....EKLKFLCLLRKS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.82|      46|      58|     496|     547|       7
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  496-  547 (78.63/61.58)	YKYSNLTLDE..LVRDPRggpdntACAFYQW..SSRYVKRI..SC.HSQDHADSDLPII
  555-  607 (66.19/39.51)	YKDRVLRLKErqLFWDPH......TCNYGQLlhEMPIVGEVilDCfKERKHIEEDVSRI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.03|      52|     565|     277|     328|       8
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  277-  328 (92.44/67.87)	EIVSD.MLHASFMILLEEQETRDN..CKSSIEMFFYVKMPRVWAAMIKLGMQPES
  842-  896 (78.58/56.51)	KIANDsQIHPSIKILQETIEVAVNkfVKESSQGSLYQPISSVCHIVRMIAGAPES
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.67|      25|     680|     129|     153|       9
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  129-  153 (40.62/22.77)	EAVIDVFVWIVEGILASRELDDFEV
  776-  800 (41.06/23.09)	ETLITACVLMVDFMMDKKSQVQFEV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00060 with Med24 domain of Kingdom Metazoa
Unable to open file!