<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00059

Description Uncharacterized protein
SequenceMSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQPQPQQQGMGHQQPMQMGLQQQLGGQQMGMQQQQMVQQQQMGPQQQPVQQQPHSQQGQPPMGQQSMLSGQTQLGSMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQALAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVAHSKQLIMKDLRFSIIDLNRRAGEALKDLRAGNTPSNSNEYLKAMDNLFAVCDEIEGNLILVCETQKQMSKMEKIFDKDAMRAGEQHVGFSNLKGRHMGGDDDSGAHLSAVNTYIDQTKQLQAAFDRAFSHVGRTLETIRRRQNMGSKIPKIEGIMDMD
Length435
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.03
Grand average of hydropathy-0.815
Instability index65.62
Isoelectric point7.22
Molecular weight47215.82
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00059
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.85|      43|      44|      63|     106|       1
---------------------------------------------------------------------------
    4-   41 (51.37/ 8.59)	.........QQGGYGQP.....PNMQQQQmmyNQQ....HMMG..RPMgQMGVQRQMY
   63-  103 (75.81/18.83)	.........QQMQMGQPQmNQMPQLQQPQ...PQQ....QGMGHQQPM.QMGLQQQLG
  122-  153 (59.98/11.41)	PQQ......QPVQ.......QQPHSQQGQ...P.......PMG.QQSM.LSG.QTQLG
  157-  208 (52.69/ 9.02)	GGSlgsvsqQHMQMQQPR.SPM.TTGSVG...PQQltpgGGPGSQAPG.STLAAASAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.82|      17|      17|     234|     250|       3
---------------------------------------------------------------------------
  234-  250 (30.99/14.66)	QPSSVQPGPASVAPATP
  254-  270 (30.83/14.54)	QPAPQASSSTAVEPTHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00059 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSGQQGGYGQPPNMQQQQMMYNQQHMMGRPMGQMGVQRQMYGQDSGMPQQQGQMQMHFAPQQQQMQMGQPQMNQMPQLQQPQPQQQGMGHQQPMQMGLQQQLGGQQMGMQQQQMVQQQQMGPQQQPVQQQPHSQQGQPPMGQQSMLSGQTQLGSMLGGSLGSVSQQHMQMQQPRSPMTTGSVGPQQLTPGGGPGSQAPGSTLAAASAGGPTSVGPMSVQPHTPMNPASQQALAQPSSVQPGPASVAPATPASNQPAPQASSSTAVEPTHPYLQDPVA
1
277










Molecular Recognition Features






MoRF SequenceStartStop




1) VQRQMYGQD
36
44