<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00047

Description Uncharacterized protein
SequenceMGSSSAQASQQYEGVLQRSNNCLVLLRQLRSRVTRLHNLLFHSPPPTRENWHAYFRRIDKVDKDFRDCFDNLETYAKGLPNQLPQIEPLNRLRAVFQEEQLDVQIMETVESMIDCENWNEGNFQTYVYLGEFLRLQRRRPSCIVPRPLSCSHWATGMSPHAQFETAFAQFQKELLKNKTGIFPTFLERTAVGSIVELRFGVLFEKQIVFTQKMLMVENAGVIEQMLFVAPHEEWSFYTDLGEKRVDLTKPSQYIVYQKLTTQANLHLMQTINTQEFRWTAQTLHQLSSAFGKFQHVFEATCRNCKKVMKDFLPPLIFDFRNLKNALHETCR
Length331
PositionTail
OrganismAncylostoma ceylanicum
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Ancylostomatoidea> Ancylostomatidae> Ancylostomatinae> Ancylostoma.
Aromaticity0.11
Grand average of hydropathy-0.402
Instability index47.32
Isoelectric point8.57
Molecular weight38810.10
Publications
PubMed=25730766

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00047
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     192.89|      35|     123|     152|     186|       1
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  118-  148 (44.29/24.89)	.WNEGNFQTYVYLGEFLR...L.Q...R...RRPSCIVPRPL
  152-  186 (59.89/35.96)	HWATGMSPHAQFETAFAQ...F.Q...KELLKNKTGIFPTFL
  188-  226 (39.97/21.82)	RTAVGSIVELRFGVLFEKqivFtQ...KMLMVENAGVIEQML
  277-  312 (48.75/28.05)	RW.TAQTLH.QLSSAFGK...F.QhvfEATCRNCKKVMKDFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00047 with Med27 domain of Kingdom Metazoa
Unable to open file!