CoNCRAtlas


CoNCRAtlas ID CoMIRGB034
Mature miRNA sequence UCGAACCAGGCUUCAUUCCCC
Locus A10:34795335-34795417(+)
Alignment 
Displayed Location: CM018211.1:34795318-34795437 Strand: +
UAAACCUUAACAAGUUAAGGGGAAUGUUGUCUGGCUCAAGACCAUUCAAUUCAAAGUUCCAAGCUUCAUCUGAACAAUCUCGAACCAGGCUUCAUUCCCCUCAACUAGGGUAUAUAUAUC
...(((((....((((.(((((((((..((((((.((.(((...((((.....(((((...)))))....))))...))).)).))))))..))))))))).))))))))).........
...............................................................................UCGAACCAGGCUUCAUUCCCC.................... gba-miR166d
....................GGAAUGUUGUCUGGCUCAAGg............................................................................... gba-miR166d*
miRNA family miR166

Expression profile

Tissue specificity indexOvule: 0.276; root: 0.542; shoot apical: 0.0375; fiber: 0.0755; all tissues: 0.0689 | Tau: 0.7888
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGB27758, CoLNCGB27758, CoLNCGB27758, CoLNCGB08918, CoLNCGB02240, CoLNCGB11401, CoLNCGB02239, CoLNCGB02238, CoLNCGB02237, CoLNCGB02235
Target CDS GB_A11G2928, GB_A05G1336, GB_D05G1338, GB_D11G2919, GB_A10G2556, GB_D10G2515, GB_A13G0847, GB_D08G1306, GB_A13G1526, GB_D03G1772
sORF
Reference
PMID Title
26133244Identification of miRNAs and Their Targets in Cotton Inoculated with Verticillium dahliae by High-Throughput Sequencing and Degradome Analysis