| CoNCRAtlas ID |
CoMIRGB011 |
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| Mature miRNA sequence |
UCGGACCAGGCUUCAUUCCUC |
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| Locus |
A04:80091618-80091786(-) |
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| Alignment |
Displayed Location: CM018205.1:80091690-80091806 Strand: -
AAAAAUGGUAGAUUUUGAGGGGAAUGUUGGCUGGCUCGAAGCUUAAACAAAUAUAGCUUCGGUUUUGGUUUAAGUUUCGGACCAGGCUUCAUUCCUCUCAAAAAUUUAUGCAUGUAU
.......(((((((((((((((((((..(.((((.(((((((((((((......(((....)))...))))))))))))).)))).)..)))))))))).)))))))))((((((((
............................................................................UCGGACCAGGCUUCAUUCCUC.................... gba-miR166a
....................GGAAUGUUGGCUGGCUCGAAG............................................................................ gba-miR166a*
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| miRNA family |
miR166 |
|---|
Expression profile
| Tissue specificity index | Ovule: 0.0744; root: 0.2308; shoot apical: 0.1443; fiber: 0.0208; all tissues: 0.5298 | Tau: 0.7782
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| Tissue |
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| Developmental Stage |
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| Treatment |
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Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB011:76-168 ORF1_CoMIRGB011:75:167
ATGCATAAATTTTTGAGAGGAATGAAGCCTGGTCCGAAACTTAAACCAAAACCGAAGCTATATTTGTTTA
AGCTTCGAGCCAGCCAACATTCC
>CoMIRGB011:104-166 ORF2_CoMIRGB011:103:165
CTGGTCCGAAACTTAAACCAAAACCGAAGCTATATTTGTTTAAGCTTCGAGCCAGCCAACATT
>CoMIRGB011:9-83 ORF3_CoMIRGB011:8:82
ATGAACAAGAAAGAAGAAAACAATGATTTAGTAACATATATAAATCGGGTCGAGACGAATCGAATACATG
CATAA
>CoMIRGB011:c165-133 ORF4_CoMIRGB011:164:132
ATGTTGGCTGGCTCGAAGCTTAAACAAATATAG
>CoMIRGB011:c81-7 ORF5_CoMIRGB011:80:6
ATGCATGTATTCGATTCGTCTCGACCCGATTTATATATGTTACTAAATCATTGTTTTCTTCTTTCTTGTT
CATAG
>CoMIRGB011:c158-36 ORF6_CoMIRGB011:157:35
CTGGCTCGAAGCTTAAACAAATATAGCTTCGGTTTTGGTTTAAGTTTCGGACCAGGCTTCATTCCTCTCA
AAAATTTATGCATGTATTCGATTCGTCTCGACCCGATTTATATATGTTACTAA
>CoMIRGB011:c31-2 ORF7_CoMIRGB011:30:1
TTGTTTTCTTCTTTCTTGTTCATAGGTTCG
>ORF1_CoMIRGB011:75:167 unnamed protein product, partial
MHKFLRGMKPGPKLKPKPKLYLFKLRASQHS
>ORF2_CoMIRGB011:103:165 unnamed protein product, partial
MVRNLNQNRSYICLSFEPANI
>ORF3_CoMIRGB011:8:82 unnamed protein product
MNKKEENNDLVTYINRVETNRIHA
>ORF4_CoMIRGB011:164:132 unnamed protein product
MLAGSKLKQI
>ORF5_CoMIRGB011:80:6 unnamed protein product
MHVFDSSRPDLYMLLNHCFLLSCS
>ORF6_CoMIRGB011:157:35 unnamed protein product
MARSLNKYSFGFGLSFGPGFIPLKNLCMYSIRLDPIYICY
>ORF7_CoMIRGB011:30:1 unnamed protein product, partial
MFSSFLFIGS
Check Peptide activity
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