lncRNA Details - CoNCRAtlas

Basic Information

CoNCRAtlas ID	CoLNCGB11381
Transcript	MSTRG.41533.1
Length	814 bp
GC Content	38.38%
Locus	A13:102602865-102603678 (+)
Direction	antisense
Type	intergenic
Exon Number	2
Coding Probability	CNCI score: -0.065536 \| CPC2 non-coding probability: 0.902746 \| PLncPRO non-coding probability: 0.959

>MSTRG.41533.1 CoLNCGB11381
ATATTCATCGTTTTGCCACTAAACCTGCACAATAATCAATCAAAGCTTATACCTCAACAG
TGAATAACATCAAAAGCCACGCTTGTTAATAACATAAATCATAAACAAAAGATACAGTCA
GGTCGTCAGTAGGGCATACCACCTTCATTGGTGCCAGTCAAATTGAACTCTTCCGAGAAT
GGAGGGAGAGAGAATATATGGAACAAAAACAGGCCGAGATATGACCAAAACGGGGAATTA
AAAATCAACTCCCGGCACTGGAAGCTGACGGAAAGAGAAGTGAGCACGCAAAAGCATTAG
TATAAGCTTTATACAAATACCTCTGTGTGCTCACTCTCTTCTGTCAATTTCTCTGTCCCA
AAGAAGGTAAAGCTTTTGCCATATAAGGAAACTGTTTCACTTAGAAACAAAAACAAATTT
TAATTGAAGGTACGAGTCAGATCTGAAAACAAGACCAAACACCCATTTAGGGAAAAAAAA
GTACCAAAAGTAAGACCTTGTAATTCCACAATCATGCCGTTTTCAGCTAAAAAAAACCCA
TCCCCAACCTGTCAAGCACAACAACAAAGGGAAAGGAAAAAAAAAAAAAAACCCTTCTTC
TCCCTTTCTCTGTTCATTCTCATCCACTTGTTCACTTATCTTTCAATCTCTCTCTATCAT
GCAGAACGTACAGGTGTCGGTCACACGTACCCGAGTGTCATCGGCCAATTAACAACAAAT
CCAACAGTTGTGTCGATGTATTGACATCAAATGACAAAAACCCAGAATGAAAATCAACCC
ACTGTATAAAATGTAAAACTCCCATTGATAAAG

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.0038; Bract: 0.0067; Fiber: 0.1647; Hypocotyl: 0.0618; Leaf: 0.3675; Ovule: 0.0708; Root: 0.1736; Stem: 0.1511 | Tau: 0.8676

Overlapping Elements

No overlap molecule

Targeted By

gba-miR156d, gba-miR156f, gba-miR156c, gba-miR156h, gba-miR156a, gba-miR156b, gba-miR156e, gba-miR156g, gba-miR156b, gba-miR156g

sORFs

>MSTRG.41533.1:13-63 ORF1_MSTRG.41533.1:12:62
TTGCCACTAAACCTGCACAATAATCAATCAAAGCTTATACCTCAACAGTGA
>MSTRG.41533.1:148-300 ORF2_MSTRG.41533.1:147:299
TTGGTGCCAGTCAAATTGAACTCTTCCGAGAATGGAGGGAGAGAGAATATATGGAACAAAAACAGGCCGA
GATATGACCAAAACGGGGAATTAAAAATCAACTCCCGGCACTGGAAGCTGACGGAAAGAGAAGTGAGCAC
GCAAAAGCATTAG
>MSTRG.41533.1:376-423 ORF3_MSTRG.41533.1:375:422
TTGCCATATAAGGAAACTGTTTCACTTAGAAACAAAAACAAATTTTAA
>MSTRG.41533.1:424-744 ORF4_MSTRG.41533.1:423:743
TTGAAGGTACGAGTCAGATCTGAAAACAAGACCAAACACCCATTTAGGGAAAAAAAAGTACCAAAAGTAA
GACCTTGTAATTCCACAATCATGCCGTTTTCAGCTAAAAAAAACCCATCCCCAACCTGTCAAGCACAACA
ACAAAGGGAAAGGAAAAAAAAAAAAAAACCCTTCTTCTCCCTTTCTCTGTTCATTCTCATCCACTTGTTC
ACTTATCTTTCAATCTCTCTCTATCATGCAGAACGTACAGGTGTCGGTCACACGTACCCGAGTGTCATCG
GCCAATTAACAACAAATCCAACAGTTGTGTCGATGTATTGA
>MSTRG.41533.1:751-789 ORF5_MSTRG.41533.1:750:788
ATGACAAAAACCCAGAATGAAAATCAACCCACTGTATAA
>MSTRG.41533.1:179-241 ORF6_MSTRG.41533.1:178:240
ATGGAGGGAGAGAGAATATATGGAACAAAAACAGGCCGAGATATGACCAAAACGGGGAATTAA
>MSTRG.41533.1:323-370 ORF7_MSTRG.41533.1:322:369
CTGTGTGCTCACTCTCTTCTGTCAATTTCTCTGTCCCAAAGAAGGTAA
>MSTRG.41533.1:392-427 ORF8_MSTRG.41533.1:391:426
CTGTTTCACTTAGAAACAAAAACAAATTTTAATTGA
>MSTRG.41533.1:443-493 ORF9_MSTRG.41533.1:442:492
CTGAAAACAAGACCAAACACCCATTTAGGGAAAAAAAAGTACCAAAAGTAA
>MSTRG.41533.1:659-712 ORF10_MSTRG.41533.1:658:711
ATGCAGAACGTACAGGTGTCGGTCACACGTACCCGAGTGTCATCGGCCAATTAA
>MSTRG.41533.1:258-305 ORF11_MSTRG.41533.1:257:304
CTGGAAGCTGACGGAAAGAGAAGTGAGCACGCAAAAGCATTAGTATAA
>MSTRG.41533.1:549-770 ORF12_MSTRG.41533.1:548:769
CTGTCAAGCACAACAACAAAGGGAAAGGAAAAAAAAAAAAAAACCCTTCTTCTCCCTTTCTCTGTTCATT
CTCATCCACTTGTTCACTTATCTTTCAATCTCTCTCTATCATGCAGAACGTACAGGTGTCGGTCACACGT
ACCCGAGTGTCATCGGCCAATTAACAACAAATCCAACAGTTGTGTCGATGTATTGACATCAAATGACAAA
AACCCAGAATGA
>MSTRG.41533.1:c777-709 ORF13_MSTRG.41533.1:776:708
TTGATTTTCATTCTGGGTTTTTGTCATTTGATGTCAATACATCGACACAACTGTTGGATTTGTTGTTAA
>MSTRG.41533.1:c708-643 ORF14_MSTRG.41533.1:707:642
TTGGCCGATGACACTCGGGTACGTGTGACCGACACCTGTACGTTCTGCATGATAGAGAGAGATTGA
>MSTRG.41533.1:c567-523 ORF15_MSTRG.41533.1:566:522
TTGTTGTTGTGCTTGACAGGTTGGGGATGGGTTTTTTTTAGCTGA
>MSTRG.41533.1:c297-238 ORF16_MSTRG.41533.1:296:237
ATGCTTTTGCGTGCTCACTTCTCTTTCCGTCAGCTTCCAGTGCCGGGAGTTGATTTTTAA
>MSTRG.41533.1:c228-145 ORF17_MSTRG.41533.1:227:144
TTGGTCATATCTCGGCCTGTTTTTGTTCCATATATTCTCTCTCCCTCCATTCTCGGAAGAGTTCAATTTG
ACTGGCACCAATGA
>MSTRG.41533.1:c117-70 ORF18_MSTRG.41533.1:116:69
CTGTATCTTTTGTTTATGATTTATGTTATTAACAAGCGTGGCTTTTGA
>MSTRG.41533.1:c623-552 ORF19_MSTRG.41533.1:622:551
ATGAGAATGAACAGAGAAAGGGAGAAGAAGGGTTTTTTTTTTTTTTTCCTTTCCCTTTGTTGTTGTGCTT
GA
>MSTRG.41533.1:c515-420 ORF20_MSTRG.41533.1:514:419
ATGATTGTGGAATTACAAGGTCTTACTTTTGGTACTTTTTTTTCCCTAAATGGGTGTTTGGTCTTGTTTT
CAGATCTGACTCGTACCTTCAATTAA
>MSTRG.41533.1:c416-309 ORF21_MSTRG.41533.1:415:308
TTGTTTTTGTTTCTAAGTGAAACAGTTTCCTTATATGGCAAAAGCTTTACCTTCTTTGGGACAGAGAAAT
TGACAGAAGAGAGTGAGCACACAGAGGTATTTGTATAA
>MSTRG.41533.1:c248-126 ORF22_MSTRG.41533.1:247:125
TTGATTTTTAATTCCCCGTTTTGGTCATATCTCGGCCTGTTTTTGTTCCATATATTCTCTCTCCCTCCAT
TCTCGGAAGAGTTCAATTTGACTGGCACCAATGAAGGTGGTATGCCCTACTGA
>MSTRG.41533.1:c95-54 ORF23_MSTRG.41533.1:94:53
ATGTTATTAACAAGCGTGGCTTTTGATGTTATTCACTGTTGA
>MSTRG.41533.1:c32-3 ORF24_MSTRG.41533.1:31:2
TTGTGCAGGTTTAGTGGCAAAACGATGAAT
>MSTRG.41533.1:c805-698 ORF25_MSTRG.41533.1:804:697
ATGGGAGTTTTACATTTTATACAGTGGGTTGATTTTCATTCTGGGTTTTTGTCATTTGATGTCAATACAT
CGACACAACTGTTGGATTTGTTGTTAATTGGCCGATGA
>MSTRG.41533.1:c673-632 ORF26_MSTRG.41533.1:672:631
CTGTACGTTCTGCATGATAGAGAGAGATTGAAAGATAAGTGA
>MSTRG.41533.1:c511-467 ORF27_MSTRG.41533.1:510:466
TTGTGGAATTACAAGGTCTTACTTTTGGTACTTTTTTTTCCCTAA
>MSTRG.41533.1:c382-344 ORF28_MSTRG.41533.1:381:343
ATGGCAAAAGCTTTACCTTCTTTGGGACAGAGAAATTGA
>MSTRG.41533.1:c316-245 ORF29_MSTRG.41533.1:315:244
TTGTATAAAGCTTATACTAATGCTTTTGCGTGCTCACTTCTCTTTCCGTCAGCTTCCAGTGCCGGGAGTT
GA
>MSTRG.41533.1:c157-86 ORF30_MSTRG.41533.1:156:85
CTGGCACCAATGAAGGTGGTATGCCCTACTGACGACCTGACTGTATCTTTTGTTTATGATTTATGTTATT
AA
>MSTRG.41533.1:c43-5 ORF31_MSTRG.41533.1:42:4
TTGATTGATTATTGTGCAGGTTTAGTGGCAAAACGATGA

>ORF1_MSTRG.41533.1:12:62 unnamed protein product
MPLNLHNNQSKLIPQQ
>ORF2_MSTRG.41533.1:147:299 unnamed protein product
MVPVKLNSSENGGRENIWNKNRPRYDQNGELKINSRHWKLTEREVSTQKH
>ORF3_MSTRG.41533.1:375:422 unnamed protein product
MPYKETVSLRNKNKF
>ORF4_MSTRG.41533.1:423:743 unnamed protein product
MKVRVRSENKTKHPFREKKVPKVRPCNSTIMPFSAKKNPSPTCQAQQQRERKKKKKPFFSLSLFILIHLF
TYLSISLYHAERTGVGHTYPSVIGQLTTNPTVVSMY
>ORF5_MSTRG.41533.1:750:788 unnamed protein product
MTKTQNENQPTV
>ORF6_MSTRG.41533.1:178:240 unnamed protein product
MEGERIYGTKTGRDMTKTGN
>ORF7_MSTRG.41533.1:322:369 unnamed protein product
MCAHSLLSISLSQRR
>ORF8_MSTRG.41533.1:391:426 unnamed protein product
MFHLETKTNFN
>ORF9_MSTRG.41533.1:442:492 unnamed protein product
MKTRPNTHLGKKKYQK
>ORF10_MSTRG.41533.1:658:711 unnamed protein product
MQNVQVSVTRTRVSSAN
>ORF11_MSTRG.41533.1:257:304 unnamed protein product
MEADGKRSEHAKALV
>ORF12_MSTRG.41533.1:548:769 unnamed protein product
MSSTTTKGKEKKKKTLLLPFSVHSHPLVHLSFNLSLSCRTYRCRSHVPECHRPINNKSNSCVDVLTSNDK
NPE
>ORF13_MSTRG.41533.1:776:708 unnamed protein product
MIFILGFCHLMSIHRHNCWICC
>ORF14_MSTRG.41533.1:707:642 unnamed protein product
MADDTRVRVTDTCTFCMIERD
>ORF15_MSTRG.41533.1:566:522 unnamed protein product
MLLCLTGWGWVFFS
>ORF16_MSTRG.41533.1:296:237 unnamed protein product
MLLRAHFSFRQLPVPGVDF
>ORF17_MSTRG.41533.1:227:144 unnamed protein product
MVISRPVFVPYILSPSILGRVQFDWHQ
>ORF18_MSTRG.41533.1:116:69 unnamed protein product
MYLLFMIYVINKRGF
>ORF19_MSTRG.41533.1:622:551 unnamed protein product
MRMNREREKKGFFFFFLSLCCCA
>ORF20_MSTRG.41533.1:514:419 unnamed protein product
MIVELQGLTFGTFFSLNGCLVLFSDLTRTFN
>ORF21_MSTRG.41533.1:415:308 unnamed protein product
MFLFLSETVSLYGKSFTFFGTEKLTEESEHTEVFV
>ORF22_MSTRG.41533.1:247:125 unnamed protein product
MIFNSPFWSYLGLFLFHIFSLPPFSEEFNLTGTNEGGMPY
>ORF23_MSTRG.41533.1:94:53 unnamed protein product
MLLTSVAFDVIHC
>ORF24_MSTRG.41533.1:31:2 unnamed protein product, partial
MCRFSGKTMN
>ORF25_MSTRG.41533.1:804:697 unnamed protein product
MGVLHFIQWVDFHSGFLSFDVNTSTQLLDLLLIGR
>ORF26_MSTRG.41533.1:672:631 unnamed protein product
MYVLHDRERLKDK
>ORF27_MSTRG.41533.1:510:466 unnamed protein product
MWNYKVLLLVLFFP
>ORF28_MSTRG.41533.1:381:343 unnamed protein product
MAKALPSLGQRN
>ORF29_MSTRG.41533.1:315:244 unnamed protein product
MYKAYTNAFACSLLFPSASSAGS
>ORF30_MSTRG.41533.1:156:85 unnamed protein product
MAPMKVVCPTDDLTVSFVYDLCY
>ORF31_MSTRG.41533.1:42:4 unnamed protein product
MIDYCAGLVAKR

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