lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB05073
TranscriptMSTRG.23960.1
Length444 bp
GC Content33.63%
LocusA08:109278148-109278591 (+)
Directionantisense
Typeintergenic
Exon Number2
Coding ProbabilityCNCI score: -0.0004096 | CPC2 non-coding probability: 0.961632 | PLncPRO non-coding probability: 0.89
>MSTRG.23960.1 CoLNCGB05073
AAAAATCAACATATGCTGATAATGAGAAGATTTACTGGTTTCCCAGGCAAATACAAAGAG
GTTACAACCAGTTTCTGGATTATTATCGGCTTTACTAGTAAAACAGGTTACAGAGGTTTC
ACAAACAGGTTACAGAGGTTACAACCATTGCTGTACCTTTGAGGTAAGAAATAAATCCCA
GTCTGCAATTGAATCAGTATTTGGGATTATATTTTTAATTCACACTTATCTCTTTTTTTT
ATAGTAACTGATTTTTTTTATAGATTTTTAATTTTTTTAAATAGAATTTAAGAGAGACAT
CTGAAGTAATTTGGGGGAGTCTTCGTTTTACAGATTATTGGGTTTTGAGGGACGATAATG
GGGAAGTTTGAAGGAAGATATCAGCAGCGTCAGCCAGAGCTCACACCAGAAAATCTCATC
AAAGCTCTTCTTTTAAGCTTTCT

Not available

Expression Profile

Tissue Specificity Index: Fiber: 0.0831; Filament: 0.0126; Leaf: 0.1002; Ovule: 0.1128; Root: 0.0726; Stem: 0.6187 | Tau: 0.9526

Overlapping Elements

No overlap molecule

Targeted By

gba-miR7495b, gba-miR530

sORFs

>MSTRG.23960.1:13-162 ORF1_MSTRG.23960.1:12:161
ATGCTGATAATGAGAAGATTTACTGGTTTCCCAGGCAAATACAAAGAGGTTACAACCAGTTTCTGGATTA
TTATCGGCTTTACTAGTAAAACAGGTTACAGAGGTTTCACAAACAGGTTACAGAGGTTACAACCATTGCT
GTACCTTTGA
>MSTRG.23960.1:358-441 ORF2_MSTRG.23960.1:357:440
ATGGGGAAGTTTGAAGGAAGATATCAGCAGCGTCAGCCAGAGCTCACACCAGAAAATCTCATCAAAGCTC
TTCTTTTAAGCTTT
>MSTRG.23960.1:35-244 ORF3_MSTRG.23960.1:34:243
CTGGTTTCCCAGGCAAATACAAAGAGGTTACAACCAGTTTCTGGATTATTATCGGCTTTACTAGTAAAAC
AGGTTACAGAGGTTTCACAAACAGGTTACAGAGGTTACAACCATTGCTGTACCTTTGAGGTAAGAAATAA
ATCCCAGTCTGCAATTGAATCAGTATTTGGGATTATATTTTTAATTCACACTTATCTCTTTTTTTTATAG
>MSTRG.23960.1:311-358 ORF4_MSTRG.23960.1:310:357
TTGGGGGAGTCTTCGTTTTACAGATTATTGGGTTTTGAGGGACGATAA
>MSTRG.23960.1:368-436 ORF5_MSTRG.23960.1:367:435
TTGAAGGAAGATATCAGCAGCGTCAGCCAGAGCTCACACCAGAAAATCTCATCAAAGCTCTTCTTTTAA
>MSTRG.23960.1:183-218 ORF6_MSTRG.23960.1:182:217
CTGCAATTGAATCAGTATTTGGGATTATATTTTTAA
>MSTRG.23960.1:c422-390 ORF7_MSTRG.23960.1:421:389
TTGATGAGATTTTCTGGTGTGAGCTCTGGCTGA
>MSTRG.23960.1:c197-108 ORF8_MSTRG.23960.1:196:107
CTGATTCAATTGCAGACTGGGATTTATTTCTTACCTCAAAGGTACAGCAATGGTTGTAACCTCTGTAACC
TGTTTGTGAAACCTCTGTAA
>MSTRG.23960.1:c71-6 ORF9_MSTRG.23960.1:70:5
CTGGTTGTAACCTCTTTGTATTTGCCTGGGAAACCAGTAAATCTTCTCATTATCAGCATATGTTGA
>MSTRG.23960.1:c397-335 ORF10_MSTRG.23960.1:396:334
CTGGCTGACGCTGCTGATATCTTCCTTCAAACTTCCCCATTATCGTCCCTCAAAACCCAATAA
>MSTRG.23960.1:c181-119 ORF11_MSTRG.23960.1:180:118
CTGGGATTTATTTCTTACCTCAAAGGTACAGCAATGGTTGTAACCTCTGTAACCTGTTTGTGA
>MSTRG.23960.1:c393-328 ORF12_MSTRG.23960.1:392:327
CTGACGCTGCTGATATCTTCCTTCAAACTTCCCCATTATCGTCCCTCAAAACCCAATAATCTGTAA

>ORF1_MSTRG.23960.1:12:161 unnamed protein product
MLIMRRFTGFPGKYKEVTTSFWIIIGFTSKTGYRGFTNRLQRLQPLLYL
>ORF2_MSTRG.23960.1:357:440 unnamed protein product, partial
MGKFEGRYQQRQPELTPENLIKALLLSF
>ORF3_MSTRG.23960.1:34:243 unnamed protein product
MVSQANTKRLQPVSGLLSALLVKQVTEVSQTGYRGYNHCCTFEVRNKSQSAIESVFGIIFLIHTYLFFL
>ORF4_MSTRG.23960.1:310:357 unnamed protein product
MGESSFYRLLGFEGR
>ORF5_MSTRG.23960.1:367:435 unnamed protein product
MKEDISSVSQSSHQKISSKLFF
>ORF6_MSTRG.23960.1:182:217 unnamed protein product
MQLNQYLGLYF
>ORF7_MSTRG.23960.1:421:389 unnamed protein product
MMRFSGVSSG
>ORF8_MSTRG.23960.1:196:107 unnamed protein product
MIQLQTGIYFLPQRYSNGCNLCNLFVKPL
>ORF9_MSTRG.23960.1:70:5 unnamed protein product
MVVTSLYLPGKPVNLLIISIC
>ORF10_MSTRG.23960.1:396:334 unnamed protein product
MADAADIFLQTSPLSSLKTQ
>ORF11_MSTRG.23960.1:180:118 unnamed protein product
MGFISYLKGTAMVVTSVTCL
>ORF12_MSTRG.23960.1:392:327 unnamed protein product
MTLLISSFKLPHYRPSKPNNL

Check Peptide Activity