CoNCRAtlas


CoNCRAtlas ID CoMIRGB117
Mature miRNA sequence UGCAUUUGCACCUGCACCUUA
Locus D13:60182876-60183003(+)
Alignment 
Displayed Location: CM018227.1:60182858-60183017 Strand: +
CCUAAGAUGUAGCUUUUAUCUGCAUUUGCACCUGCACCUUAUUGUUUGUUUCAGCUAUGUCAGAAAAACAAAACACUGUUAGAUAUGUUUUGUGUGGUGUGGUUGGAGACCAAACAAAGAGGUGCAGAUGCAGUUGCAGGUGAAUGCCAUUUUAGCUAUC
.((((((((..((.((((((((((.(((((.(((((((((.(((((((((((((((((((((.(....(((((((.(((...))))))))))).))))))))))))))..))))))).))))))))).))))).)))))))))).)))))))))).))).
....................UGCAUUUGCACCUGCACCUUA....................................................................................................................... gba-miR530
.......................................................................................................................AGGUGCAGAUGCAGUUGCAGG.................... gba-miR530*
miRNA family miR530

Expression profile

Tissue specificity indexOvule: 0.0116; root: 0.0059; shoot apical: 0.9047; fiber: 0.0778 | Tau: 0.9737

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGB22192, CoLNCGB22193, CoLNCGB08476, CoLNCGB08475, CoLNCGB08474, CoLNCGB08473, CoLNCGB28832, CoLNCGB28833, CoLNCGB16319, CoLNCGB16318
Target CDS GB_A09G2548, GB_D09G2387, GB_D05G3217, GB_A13G1884, GB_A09G1675, GB_A03G1023, GB_D02G1144, GB_A11G3563, GB_D04G1554, GB_A01G0162
sORF
Reference
PMID Title
0NA