| CoNCRAtlas ID |
CoMIRGB020 |
|---|
| Mature miRNA sequence |
UUCCCAAAACCUCCAAUUCCAA |
|---|
| Locus |
A07:10745382-10745557(+) |
|---|
| Alignment |
Displayed Location: CM018208.1:10745437-10745551 Strand: +
UGAAGUUUCUGGUAAUUAUAGGAAUUGCGUUUUUGGGAAGAAGCACGAUCGAUCUGCAUUCGCCACUAAUUUCUUCCCAAAACCUCCAAUUCCAAUGAUUUCCAGAAACUUUUCC
.(((((((((((.((((((.(((((((.(.(((((((((((((......(((.......))).......))))))))))))).)..))))))).)))))).))))))))))))))
.........................................................................UUCCCAAAACCUCCAAUUCCAA.................... gba-miR482c
....................GGAAUUGCGUUUUUGGGAAGA.......................................................................... gba-miR482c*
|
|---|
| miRNA family |
miR482 |
|---|
Expression profile
| Tissue specificity index | Ovule: 0.2009; root: 0.4868; shoot apical: 0.1994; fiber: 0.078; all tissues: 0.0349 | Tau: 0.7364
|
|---|
Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB020:79-123 ORF1_CoMIRGB020:78:122
TTGCGTTTTTGGGAAGAAGCACGATCGATCTGCATTCGCCACTAA
>CoMIRGB020:27-152 ORF2_CoMIRGB020:26:151
TTGATGAGAGAAGATAGGAAAGGGAGATTGAAGTTTCTGGTAATTATAGGAATTGCGTTTTTGGGAAGAA
GCACGATCGATCTGCATTCGCCACTAATTTCTTCCCAAAACCTCCAATTCCAATGA
>CoMIRGB020:c159-70 ORF3_CoMIRGB020:158:69
CTGGAAATCATTGGAATTGGAGGTTTTGGGAAGAAATTAGTGGCGAATGCAGATCGATCGTGCTTCTTCC
CAAAAACGCAATTCCTATAA
>CoMIRGB020:c113-3 ORF4_CoMIRGB020:112:2
ATGCAGATCGATCGTGCTTCTTCCCAAAAACGCAATTCCTATAATTACCAGAAACTTCAATCTCCCTTTC
CTATCTTCTCTCATCAATATATTATTTTTCTTTCTTTGCGG
>ORF1_CoMIRGB020:78:122 unnamed protein product
MRFWEEARSICIRH
>ORF2_CoMIRGB020:26:151 unnamed protein product
MMREDRKGRLKFLVIIGIAFLGRSTIDLHSPLISSQNLQFQ
>ORF3_CoMIRGB020:158:69 unnamed protein product
MEIIGIGGFGKKLVANADRSCFFPKTQFL
>ORF4_CoMIRGB020:112:2 unnamed protein product, partial
MQIDRASSQKRNSYNYQKLQSPFPIFSHQYIIFLSLR
Check Peptide activity
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