| CoNCRAtlas ID |
CoMIRGB010 |
|---|
| Mature miRNA sequence |
UCUUUCCUACUCCUCCCAUUCC |
|---|
| Locus |
A04:73256829-73256988(-) |
|---|
| Alignment |
Displayed Location: CM018205.1:73256831-73256953 Strand: -
GAGUUGCCGGGAGUUUUUGGAAGUGGGAUGGGUGGAAAGAUUUGUAUUUUCUCUCUUGAUUUUCUAAGAAUGUAAAGCAAAUCUUUCCUACUCCUCCCAUUCCACUUAUUUCCAGUUCUUCCU
(((..((.((((((...(((((.(((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))))))...)))))).)).)))..)
.................................................................................UCUUUCCUACUCCUCCCAUUCC.................... gba-miR482a
....................AAGUGGGAUGGGUGGAAAGAUU................................................................................. gba-miR482a*
|
|---|
| miRNA family |
miR482 |
|---|
Expression profile
| Tissue specificity index | Ovule: 0.2438; root: 0.4395; shoot apical: 0.1476; fiber: 0.118; all tissues: 0.0511 | Tau: 0.6811
|
|---|
Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB010:10-156 ORF1_CoMIRGB010:9:155
CTGGAAATAAGTGGAATGGGAGGAGTAGGAAAGATTTGCTTTACATTCTTAGAAAATCAAGAGAGAAAAT
ACAAATCTTTCCACCCATCCCACTTCCAAAAACTCCCGGCAACTCTTTCTCCCTTTCCCTCTTTAACAAT
AAAATGA
>CoMIRGB010:45-158 ORF2_CoMIRGB010:44:157
TTGCTTTACATTCTTAGAAAATCAAGAGAGAAAATACAAATCTTTCCACCCATCCCACTTCCAAAAACTC
CCGGCAACTCTTTCTCCCTTTCCCTCTTTAACAATAAAATGATG
>CoMIRGB010:c108-58 ORF3_CoMIRGB010:107:57
TTGGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGATTTTCTAA
>CoMIRGB010:c148-50 ORF4_CoMIRGB010:147:49
TTGTTAAAGAGGGAAAGGGAGAAAGAGTTGCCGGGAGTTTTTGGAAGTGGGATGGGTGGAAAGATTTGTA
TTTTCTCTCTTGATTTTCTAAGAATGTAA
>ORF1_CoMIRGB010:9:155 unnamed protein product
MEISGMGGVGKICFTFLENQERKYKSFHPSHFQKLPATLSPFPSLTIK
>ORF2_CoMIRGB010:44:157 unnamed protein product, partial
MLYILRKSREKIQIFPPIPLPKTPGNSFSLSLFNNKMM
>ORF3_CoMIRGB010:107:57 unnamed protein product
MEVGWVERFVFSLLIF
>ORF4_CoMIRGB010:147:49 unnamed protein product
MLKREREKELPGVFGSGMGGKICIFSLDFLRM
Check Peptide activity
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