| CoNCRAtlas ID |
CoMIRGB002 |
|---|
| Mature miRNA sequence |
UUGGACAGAGUAAUCACGGUCG |
|---|
| Locus |
A02:4082901-4083019(-) |
|---|
| Alignment |
Displayed Location: CM018203.1:4082884-4083014 Strand: -
UUCAGAUCCGGUCCAUUUGCUUGGACAGAGUAAUCACGGUCGAUUAAAUACUCUUAAUUCUGUUUAGCAAAACAGGUUUCGUUUAAAUCAAUCGUGUUACUCUGUCCAAACAGAUGUUUUGGAUCAUCGAA
....(((((((..((((((.(((((((((((((.((((((.((((....((.......(((((((....)))))))....))...)))).))))))))))))))))))).))))))..)))))))...(((
....................UUGGACAGAGUAAUCACGGUCG......................................................................................... gba-miR3954a
..........................................................................................AUCGUGUUACUCUGUCCAAAC.................... gba-miR3954a*
|
|---|
| miRNA family |
miR3954 |
|---|
Expression profile
| Tissue specificity index | Ovule: 0.0016; root: 0.6042; shoot apical: 0.3201; fiber: 0.073; all tissues: 0.0011 | Tau: 0.8362
|
|---|
Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB002:1-60 ORF1_CoMIRGB002:0:59
CTGTTTGGACAGAGTAACACGATTGATTTAAACGAAACCTGTTTTGCTAAACAGAATTAA
>CoMIRGB002:c97-47 ORF2_CoMIRGB002:96:46
TTGCTTGGACAGAGTAATCACGGTCGATTAAATACTCTTAATTCTGTTTAG
>ORF1_CoMIRGB002:0:59 unnamed protein product, partial
LFGQSNTIDLNETCFAKQN
>ORF2_CoMIRGB002:96:46 unnamed protein product
MLGQSNHGRLNTLNSV
Check Peptide activity
|