CoNCRAtlas


CoNCRAtlas ID CoMIRGB092
Mature miRNA sequence UUGACAGAAGAUAGAGAGCAC
Locus D09:23151189-23151301(+)
Alignment 
Displayed Location: CM018223.1:23151176-23151310 Strand: +
GAGGCAAUUGGUGAUUGUUGUUGACAGAAGAUAGAGAGCACAGAUGAUGGUGUGUAAUUAGGAGUCUUGAAGCAAUGCAUCCCACUCCUUUGUGCUCUUUAUGCUUCUGUCAUCACCUUCAAGCCACUCUUACCU
(((((....(((((.......(((((((((((((((((((((((.(((((.(((((.(((((...))))).....))))).))).)).)))))))))))))).)))))))))))))).....)))..))))..))
....................UUGACAGAAGAUAGAGAGCAC.............................................................................................. gba-miR157c
.............................................................................................GCUCUUUAUGCUUCUGUCAUCA.................... gba-miR157c*
miRNA family miR157

Expression profile

Tissue specificity indexOvule: 0.0003; root: 0.4914; shoot apical: 0.4643; fiber: 0.0406; all tissues: 0.0034 | Tau: 0.7412

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGB22348, CoLNCGB23736, CoLNCGB23735, CoLNCGB23734, CoLNCGB23733, CoLNCGB07097, CoLNCGB23283, CoLNCGB07096, CoLNCGB19497, CoLNCGB19496
Target CDS GB_D01G1853, GB_A03G1534, GB_D02G1688, GB_A01G1756, GB_D04G2127, GB_A04G1736, GB_A11G3648, GB_D11G3672, GB_D01G1531, GB_D04G1004
sORF
Reference
PMID Title
25131375Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense