CoNCRAtlas


CoNCRAtlas ID CoMIRGB086
Mature miRNA sequence UUGACAGAAGAUAGAGAGCAC
Locus D07:6964286-6964448(+)
Alignment 
Displayed Location: CM018221.1:6964323-6964447 Strand: +
GGAGGCAGUGGUGAAUGUUGUUGACAGAAGAUAGAGAGCACAGAUGAUGGUUUGCAAGUACUUAAUGCAUUCCACUCCUUUGUGCUCUCUAUGCUUCUGUCAUCAUCACCUUCAGCCCCUCUUAC
((.(((...(((((....((.(((((((((((((((((((((((.(((((..((((.........))))..))).)).)))))))))))))).))))))))).)))))))....))))))))).)
....................UUGACAGAAGAUAGAGAGCAC.................................................................................... gba-miR157a
...................................................................................GCUCUCUAUGCUUCUGUCAUCA.................... gba-miR157a*
miRNA family miR157

Expression profile

Tissue specificity indexOvule: 0.0048; root: 0.2133; shoot apical: 0.7819 | Tau: 0.9302

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGB22348, CoLNCGB23736, CoLNCGB23735, CoLNCGB23734, CoLNCGB23733, CoLNCGB07097, CoLNCGB23283, CoLNCGB07096, CoLNCGB19497, CoLNCGB19496
Target CDS GB_D01G1853, GB_A03G1534, GB_D02G1688, GB_A01G1756, GB_D04G2127, GB_A04G1736, GB_A11G3648, GB_D11G3672, GB_D01G1531, GB_D04G1004
sORF
Reference
PMID Title
25131375Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense