CoNCRAtlas


CoNCRAtlas ID CoMIRGH240
Mature miRNA sequence GCUCAAGAAAGCUGUGGGAGA
Locus D13:60187968-60188247(+)
Alignment 
Displayed Location: D13:60187958-60188108 Strand: +
UCUGAUCAUGCUUUUCCACAGCUUUCUUGAACUUUCUUUGUUUUCCAUCAUAAAAGAAUUAGCUAAUAGCUAGAUACAUGUAUAUAUAUGUGUAUGUAUAUACCAUGGAAGCUCAAGAAAGCUGUGGGAGAACAUGAUGACAAUUCAGGAC
((((((((((.(((((((((((((((((((.((((((((.............)))))..(((((...)))))....(((((((((((((....))))))))).)))).))).))))))))))))))))))).))))))......((..(((
..............................................................................................................GCUCAAGAAAGCUGUGGGAGA.................... ghi-miR396j
.............UUCCACAGCUUUCUUGAACUU..................................................................................................................... ghi-miR396j*
miRNA family miR396

Expression profile

Tissue specificity indexovule: 0.0092; fiber: 0.1681; shoot apical: 0.0329; ovule and fiber: 0.0164; cotyledon: 0.0095; cotton boll: 0.1843; leaf: 0.025; anthers: 0.0036; hypocotyls: 0.5471; seedlings: 0.0041 | Tau: 0.9172

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH34024, CoLNCGH20999, CoLNCGH20999, CoLNCGH46770, CoLNCGH46769, CoLNCGH46770, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024
Target CDS Gh_D13G231200.1, Gh_D07G043100.1, Gh_A11G180600.1, Gh_A02G132900.1, Gh_A10G111800.1, Gh_D10G161900.1, Gh_D07G043100.1, Gh_D13G228800.1, Gh_A12G255200.1, Gh_D12G249500.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)