| CoNCRAtlas ID | CoMIRGH239 |
|---|---|
| Mature miRNA sequence | UGACAGAAGAGAGUGAGCACU |
| Locus | D13:58318194-58318344(-) |
| Alignment | Displayed Location: D13:58318210-58318333 Strand: - CAAUGAGAAAAAAGAGAGAUUGACAGAAGAGAGUGAGCACUCACAGGCAAUUGUACGCAAAAGGCAUACCUUUAUCCGUGGUUGCUUACUUCUCUUCUGUCGGCUAUUUUCUUCUUCUUCAUCA .((((((((.((.((((((((((((((((((((((((((.((((.((.((..(((.((.....)).)))..)).)).)))).))))))).)))))))))))))....)))))).)).))).))) ....................UGACAGAAGAGAGUGAGCACU................................................................................... ghi-miR156r ..................................................................................UGCUUACUUCUCUUCUGUCGGC.................... ghi-miR156r* |
| miRNA family | miR156 |
Expression profile
| Tissue specificity index | ovule: 0.0016; fiber: 0.0102; shoot apical: 0.1738; ovule and fiber: 0.0025; cotyledon: 0.4655; cotton boll: 0.0013; callus: 0.1505; leaf: 0.056; anthers: 0.0034; seedlings: 0.1351 | Tau: 0.8852 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH29713, CoLNCGH02111, CoLNCGH29713, CoLNCGH34498, CoLNCGH35314, CoLNCGH35315, CoLNCGH35313, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572 |
|---|
| Target CDS | Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |