| CoNCRAtlas ID | CoMIRGH238 |
|---|---|
| Mature miRNA sequence | UGACAGAAGAGAGUGAGCAC |
| Locus | D13:57921620-57921719(-) |
| Alignment | Displayed Location: D13:57921603-57921725 Strand: - CUUCUUUGGGACAGAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGUAUUUGUAUAAAGCUUAUACUAAUGCUUUUGCGUGCUCACUCCUCUUUCCGUCAGCUUCCAGUGCCGGGAUUUGAU .(((((((...))))))).(((((.(((((((((((((((.((((((((((.((((((...)))))).)))))))))).))))))))).))))))..)))))..((((((((((((((..((. ....................UGACAGAAGAGAGUGAGCAC................................................................................... ghi-miR156q .................................................................................GCUCACUCCUCUUUCCGUCAGC.................... ghi-miR156q* |
| miRNA family | miR156 |
Expression profile
| Tissue specificity index | fiber: 0.0039; shoot apical: 0.4915; cotyledon: 0.0939; callus: 0.0279; leaf: 0.0247; anthers: 0.0496; hypocotyls: 0.2497; seedlings: 0.0588 | Tau: 0.8965 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH29713, CoLNCGH02111, CoLNCGH34498, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539, CoLNCGH28143, CoLNCGH28144, CoLNCGH28145 |
|---|
| Target CDS | Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |