CoNCRAtlas


CoNCRAtlas ID CoMIRGH238
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus D13:57921620-57921719(-)
Alignment 
Displayed Location: D13:57921603-57921725 Strand: -
CUUCUUUGGGACAGAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGUAUUUGUAUAAAGCUUAUACUAAUGCUUUUGCGUGCUCACUCCUCUUUCCGUCAGCUUCCAGUGCCGGGAUUUGAU
.(((((((...))))))).(((((.(((((((((((((((.((((((((((.((((((...)))))).)))))))))).))))))))).))))))..)))))..((((((((((((((..((.
....................UGACAGAAGAGAGUGAGCAC................................................................................... ghi-miR156q
.................................................................................GCUCACUCCUCUUUCCGUCAGC.................... ghi-miR156q*
miRNA family miR156

Expression profile

Tissue specificity indexfiber: 0.0039; shoot apical: 0.4915; cotyledon: 0.0939; callus: 0.0279; leaf: 0.0247; anthers: 0.0496; hypocotyls: 0.2497; seedlings: 0.0588 | Tau: 0.8965
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D135791948557922181-CoLNCGH20891
D135792077457922181-CoLNCGH20892
D135792078757922181-CoLNCGH20893
D135792079557922181-CoLNCGH20894
D135792092857922181-CoLNCGH20895
D135791954657922181-CoLNCGH20896
D135791971157922181-CoLNCGH20897
D135792041357922181-CoLNCGH20898
D135792055457922181-CoLNCGH20899
D135792069657922181-CoLNCGH20900
D135792072657922181-CoLNCGH20901
D135792077457922181-CoLNCGH20902
D135792077457922181-CoLNCGH20903
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH34498, CoLNCGH44573, CoLNCGH53080, CoLNCGH44572, CoLNCGH05539, CoLNCGH28143, CoLNCGH28144, CoLNCGH28145
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
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PMID Title