CoNCRAtlas


CoNCRAtlas ID CoMIRGH235
Mature miRNA sequence UAAUCUGCAUCCUGAGGUUUG
Locus D13:24972661-24972741(-)
Alignment 
Displayed Location: D13:24972642-24972755 Strand: -
UACAGCUGGUACGGAGUGGGUAAUCUGCAUCCUGAGGUUUGGAUCAAAUGGCUUGUUUCCCUUGCUGCAUCCAGUCCUUGGGAUGCAGAUUACCUCUUCCUCACUGGCCACCUA
..((((((....((((.((((((((((((((((((((.((((((((...((........))....)).)))))).)))))))))))))))))))).))))...((((....)))
....................UAAUCUGCAUCCUGAGGUUUG......................................................................... ghi-miR2111c
.........................................................................GUCCUUGGGAUGCAGAUUACC.................... ghi-miR2111c*
miRNA family miR2111

Expression profile

Tissue specificity indexovule: 0.0055; fiber: 0.2122; shoot apical: 0.1055; ovule and fiber: 0.3221; cotyledon: 0.0023; cotton boll: 0.1049; leaf: 0.0449; anthers: 0.0366; hypocotyls: 0.1624; seedlings: 0.0036 | Tau: 0.7896

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH42117, CoLNCGH42116, CoLNCGH16088, CoLNCGH16098, CoLNCGH42114, CoLNCGH11857, CoLNCGH27320, CoLNCGH27320, CoLNCGH12626, CoLNCGH12625
Target CDS Gh_A07G254400.1, Gh_D07G252700.1, Gh_A05G340800.1, Gh_D04G088200.1, Gh_A12G134600.1, Gh_A12G134600.2, Gh_D12G134800.1, Gh_A08G215200.1, Gh_D08G210700.1, Gh_A09G172800.1
sORF
Reference
PMID Title
No references available