| CoNCRAtlas ID | CoMIRGH234 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAG |
| Locus | D13:1740581-1740740(+) |
| Alignment | Displayed Location: D13:1740584-1740755 Strand: + AACAGUCAUUGUUUGCGGAUGGAGCAUCAUCAAGAUUCACGUAUCAUUCUUAGGGCAAUCGAAAAUUAAUGGUGAAGAUCAUCCUUUUUGCUUCGCUAUACAUGUACCAAUUAGUCCUUUGAAUAUAUAUGAGAAUCUUGAUGAUGCUGCAGCGGCAAUAAAUGGCUAAAUU ...(((((((..((((.(.((.((((((((((((((((.(((((.((((..((((((((.........(((((((((.............)))))))))..........))).)))))..))))..))))).)))))))))))))))).)).).))))..)))))))..... ...................................................................................................................................AGAAUCUUGAUGAUGCUGCAG.................... ghi-miR172l ....................GGAGCAUCAUCAAGAUUCACG................................................................................................................................... ghi-miR172l* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | ovule: 0.6432; fiber: 0.0032; ovule and fiber: 0.0074; cotton boll: 0.2693; anthers: 0.0768 | Tau: 0.9445 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH19317, CoLNCGH19318, CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH44731 |
|---|
| Target CDS | Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_D10G236700.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_A03G047000.1, Gh_A05G087000.1, Gh_D05G098700.1, Gh_A10G213200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25572837 | Small RNA sequencing identifies miRNA roles in ovule and fibre development |