CoNCRAtlas


CoNCRAtlas ID CoMIRGH233
Mature miRNA sequence CUGAAGUGUUUGGGGGAACUC
Locus D13:13261145-13261227(-)
Alignment 
Displayed Location: D13:13261126-13261247 Strand: -
AAAGUCAGCUGUUCCCUGGAGUUCCCCUGAUCACUUCAUCGGGGCUAUUUUACAACCCUAGACACAGGGAAUUUGAUCCUACUGAAGUGUUUGGGGGAACUCUGGGAGAUAGUGGACACUGG
(((((..(((....((((((((((((((((.(((((((..((((.((..((....((((......))))))..)).))))..))))))).))))))))))))))))(((((((((((.((..
.................................................................................CUGAAGUGUUUGGGGGAACUC.................... ghi-miR395e
....................GUUCCCCUGAUCACUUCAUCG................................................................................. ghi-miR395e*
miRNA family miR395

Expression profile

Tissue specificity indexovule: 0.0048; fiber: 0.3674; shoot apical: 0.005; cotyledon: 0.2331; cotton boll: 0.1932; leaf: 0.0888; anthers: 0.028; seedlings: 0.0797 | Tau: 0.8279
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D131326045713261283-CoLNCGH19684
D131326051813261283-CoLNCGH19685
D131326064813261283-CoLNCGH19686
Target lncRNA CoLNCGH51706, CoLNCGH01290, CoLNCGH18451, CoLNCGH01289, CoLNCGH05362, CoLNCGH07996, CoLNCGH07945, CoLNCGH07944, CoLNCGH43807, CoLNCGH43808
Target CDS Gh_A13G153900.1, Gh_D13G156900.1, Gh_A01G036600.1, Gh_D11G276200.1, Gh_D03G096300.1, Gh_A01G252400.1, Gh_A01G252400.2, Gh_D01G246600.1, Gh_D09G053600.1, Gh_A09G057300.1
sORF
Reference
PMID Title
29481843MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.)