CoNCRAtlas


CoNCRAtlas ID CoMIRGH232
Mature miRNA sequence UUCCCGAGGCCACCCAUUCCAG
Locus D12:9465516-9465731(+)
Alignment 
Displayed Location: D12:9465599-9465725 Strand: +
UGGAGCUACUGGAAAUUACAGGAAUGGGGUCUUUGGGAUGAACCAUUCGAAAGCUUUUCAUCGUUUUAGUCAUAAAUUGAAGUUCUUCCCGAGGCCACCCAUUCCAGUGAUUUCCAGAGGCUUAUCC
..(((((.(((((((((((.(((((((((.((((((((.((((..(((((((((........))))..........))))))))).)))))))).).)))))))).))))))))))).))))).)))
.....................................................................................UUCCCGAGGCCACCCAUUCCAG.................... ghi-miR1183b
....................GGAAUGGGGUCUUUGGGAUGA...................................................................................... ghi-miR1183b*
miRNA family miR1183

Expression profile

Tissue specificity indexovule: 0.0602; fiber: 0.2142; shoot apical: 0.1451; ovule and fiber: 0.0384; cotyledon: 0.1032; cotton boll: 0.0432; callus: 0.0176; leaf: 0.0615; anthers: 0.1182; hypocotyls: 0.0742; seedlings: 0.1242 | Tau: 0.6331

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH08031, CoLNCGH39769, CoLNCGH46198, CoLNCGH20453, CoLNCGH20452, CoLNCGH20449, CoLNCGH20450, CoLNCGH20451, CoLNCGH20448, CoLNCGH20447
Target CDS Gh_D11G144200.1, Gh_A11G142700.1, Gh_D07G140000.1, Gh_A07G140300.1, Gh_D10G132600.1, Gh_D08G032700.1, Gh_A08G033100.1, Gh_Contig00266G000100.1, Gh_A07G179700.1, Gh_A04G128100.1
sORF
Reference
PMID Title
No references available