CoNCRAtlas


CoNCRAtlas ID CoMIRGH231
Mature miRNA sequence UUGACAGAAGAUAGAGAGCAC
Locus D12:61864901-61864988(-)
Alignment 
Displayed Location: D12:61864884-61865008 Strand: -
GGAGGCACUGGUGAUUGUUGUUGACAGAAGAUAGAGAGCACAGAUGAUGGUGUUGCCUAUGUGCAUGCAUCCCACUCCUUUGUGCUCUCUAUGCUUCUGUCAUCAUCACCUUUCAUAGCCCCUCU
((.(((...(((((....((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))))))).......))))))))
....................UUGACAGAAGAUAGAGAGCAC.................................................................................... ghi-miR156p
...................................................................................GCUCUCUAUGCUUCUGUCAUCA.................... ghi-miR156p*
miRNA family miR156

Expression profile

Tissue specificity indexovule: 0.0136; fiber: 0.0493; cotyledon: 0.924; callus: 0.0027; leaf: 0.009; anthers: 0.0015 | Tau: 0.9918
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH44573, CoLNCGH44572, CoLNCGH44573, CoLNCGH44572, CoLNCGH38244, CoLNCGH14404, CoLNCGH14403, CoLNCGH28903, CoLNCGH15626, CoLNCGH15625
Target CDS Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2, Gh_A01G173100.3, Gh_D04G208500.1, Gh_A04G164100.1, Gh_A11G360800.1
sORF
Reference
PMID Title
31138116Identification and profiling of upland cotton microRNAs at fiber initiation stage under exogenous IAA application