| CoNCRAtlas ID | CoMIRGH230 |
|---|---|
| Mature miRNA sequence | UGCCAAAGGAGAGUUGCCCUG |
| Locus | D12:61326221-61326306(+) |
| Alignment | Displayed Location: D12:61326202-61326319 Strand: + UAAUAAGCAAACCAGUCUUAGGGCACCUCUCACUUAGGCAGGUAAUAGUGCAUAUUAUGGCAUUUGUUCCCAUGACUUGCCAAAGGAGAGUUGCCCUGUGACUGCUUCAGCUUAGCAU ...(((((....(((((.(((((((.(((((.(((.(((((((...(((((........)))))..........))))))).)))))))).))))))).))))).....)))))...( .............................................................................UGCCAAAGGAGAGUUGCCCUG.................... ghi-miR399e ....................GGGCACCUCUCACUUAGGCAGG............................................................................ ghi-miR399e* |
| miRNA family | miR399 |
Expression profile
| Tissue specificity index | fiber: 0.0288; shoot apical: 0.0097; cotyledon: 0.1887; cotton boll: 0.0103; callus: 0.006; leaf: 0.0823; anthers: 0.0009; hypocotyls: 0.0275; seedlings: 0.6457 | Tau: 0.9451 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH02794, CoLNCGH02793, CoLNCGH05779, CoLNCGH02793, CoLNCGH05778, CoLNCGH27233, CoLNCGH27232, CoLNCGH00705, CoLNCGH01923, CoLNCGH18706 |
|---|
| Target CDS | Gh_D06G192500.4, Gh_A06G190300.1, Gh_A06G190300.2, Gh_A06G190300.3, Gh_D06G192500.1, Gh_D06G192500.2, Gh_D06G192500.3, Gh_D06G192500.5, Gh_D10G150000.1, Gh_A09G185200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |