CoNCRAtlas


CoNCRAtlas ID CoMIRGH229
Mature miRNA sequence UCCAAAGGGAUCGCAUUGAUCU
Locus D12:60966786-60966932(+)
Alignment 
Displayed Location: D12:60966786-60966946 Strand: +
UCCUAGUGCAGGUGGAGAGCUCCAAAGGGAUCGCAUUGAUCUAAUGUCGAUGAUGGGCUUCCUUGAAAACCUUGACGAAUUGAUUUUUGAUUUUUGUUGAUUCAGUUCAGUACUCAUUGGAUCAUGCGAUCCCUUCGGAAUUUUCCAUCGCUAGCUCUAAA
...))).)).(((((((((.(((.((((((((((((.(((((((((((((....((..(((...)))..)))))))(((((((...(((((....))))).))))))).......)))))))))))))))))))).))).)))))))))(((((((.....
....................UCCAAAGGGAUCGCAUUGAUCU....................................................................................................................... ghi-miR393b
........................................................................................................................AUCAUGCGAUCCCUUCGGAAU.................... ghi-miR393b*
miRNA family miR393

Expression profile

Tissue specificity indexovule: 0.123; fiber: 0.0364; shoot apical: 0.0037; ovule and fiber: 0.0087; cotyledon: 0.06; cotton boll: 0.0308; callus: 0.1594; leaf: 0.0214; anthers: 0.5261; hypocotyls: 0.0303 | Tau: 0.9099

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH39329, CoLNCGH45380, CoLNCGH45381, CoLNCGH09277, CoLNCGH39666, CoLNCGH39667, CoLNCGH39668, CoLNCGH00821, CoLNCGH00820, CoLNCGH27132
Target CDS Gh_D11G068200.2, Gh_A11G068600.1, Gh_D07G255600.1, Gh_D11G068200.1, Gh_A07G257700.1, Gh_A08G050800.1, Gh_A08G080300.1, Gh_A08G134700.1, Gh_A11G125100.1, Gh_D08G075500.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development