CoNCRAtlas


CoNCRAtlas ID CoMIRGH228
Mature miRNA sequence CGAGCCGAAUCAAUAUCACUC
Locus D12:59992864-59992934(+)
Alignment 
Displayed Location: D12:59992849-59992954 Strand: +
GUGGGAGGAGUAGACAUGACGUGAUAUUGUUUCGGCUCAUCUUAGUGUGAUUAAAAAUUUCAAGGCGAGCCGAAUCAAUAUCACUCAUGUGUACUUUUUCUUUAUU
..((((((((((.((((((.(((((((((.((((((((.((((...((........))...)))).)))))))).))))))))))))))).))))))))))....)
.................................................................CGAGCCGAAUCAAUAUCACUC.................... ghi-miR171k
....................GUGAUAUUGUUUCGGCUCAUC................................................................. ghi-miR171k*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.0012; fiber: 0.0205; shoot apical: 0.0021; cotton boll: 0.0083; callus: 0.0016; leaf: 0.7109; anthers: 0.0237; hypocotyls: 0.2317 | Tau: 0.9593
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH44504, CoLNCGH43726, CoLNCGH43727, CoLNCGH42258, CoLNCGH42259, CoLNCGH42260, CoLNCGH42261, CoLNCGH44504, CoLNCGH27628, CoLNCGH17199
Target CDS Gh_A06G047700.1, Gh_D06G047200.1, Gh_D05G234400.1, Gh_A05G217600.1, Gh_A02G199300.1, Gh_D04G078500.1, Gh_A05G331000.1, Gh_A12G108300.1, Gh_A12G278100.1, Gh_D12G273100.1
sORF
Reference
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PMID Title