| CoNCRAtlas ID | CoMIRGH228 |
|---|---|
| Mature miRNA sequence | CGAGCCGAAUCAAUAUCACUC |
| Locus | D12:59992864-59992934(+) |
| Alignment | Displayed Location: D12:59992849-59992954 Strand: + GUGGGAGGAGUAGACAUGACGUGAUAUUGUUUCGGCUCAUCUUAGUGUGAUUAAAAAUUUCAAGGCGAGCCGAAUCAAUAUCACUCAUGUGUACUUUUUCUUUAUU ..((((((((((.((((((.(((((((((.((((((((.((((...((........))...)))).)))))))).))))))))))))))).))))))))))....) .................................................................CGAGCCGAAUCAAUAUCACUC.................... ghi-miR171k ....................GUGAUAUUGUUUCGGCUCAUC................................................................. ghi-miR171k* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0012; fiber: 0.0205; shoot apical: 0.0021; cotton boll: 0.0083; callus: 0.0016; leaf: 0.7109; anthers: 0.0237; hypocotyls: 0.2317 | Tau: 0.9593 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH44504, CoLNCGH43726, CoLNCGH43727, CoLNCGH42258, CoLNCGH42259, CoLNCGH42260, CoLNCGH42261, CoLNCGH44504, CoLNCGH27628, CoLNCGH17199 |
|---|
| Target CDS | Gh_A06G047700.1, Gh_D06G047200.1, Gh_D05G234400.1, Gh_A05G217600.1, Gh_A02G199300.1, Gh_D04G078500.1, Gh_A05G331000.1, Gh_A12G108300.1, Gh_A12G278100.1, Gh_D12G273100.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |