| CoNCRAtlas ID | CoMIRGH226 |
|---|---|
| Mature miRNA sequence | GCUCAAGAAAGCUGUGGGAAA |
| Locus | D12:45187895-45188026(-) |
| Alignment | Displayed Location: D12:45187885-45188044 Strand: - UGGGGUUUGGUUGCAUGCUUUUUCACAGCUUUCUUGAACUUGGCUACUCUCUCUGGCUCUGCAUGCCUUCUCUUCUCUAUUCCUACUGGAAGCAUUAAUCCUCAGUCAGUGUAUAUGAAGCUCAAGAAAGCUGUGGGAAAUCAUGGACGCCCCAUUUUUA ).))))).((((.((((.(((((((((((((((((((.(((.(.(((.((..((((......((((.............((((....))))))))......))))..)).)))..).))).))))))))))))))))))).)))).).)))))))))))) .......................................................................................................................GCUCAAGAAAGCUGUGGGAAA.................... ghi-miR396i ....................UUUCACAGCUUUCUUGAACUU....................................................................................................................... ghi-miR396i* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.0819; fiber: 0.3709; shoot apical: 0.0164; ovule and fiber: 0.0089; cotyledon: 0.0163; cotton boll: 0.1323; callus: 0.0027; leaf: 0.3025; anthers: 0.0092; hypocotyls: 0.0555; seedlings: 0.0034 | Tau: 0.8304 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH20999, CoLNCGH46770, CoLNCGH34024, CoLNCGH20999, CoLNCGH46769, CoLNCGH46770, CoLNCGH27856, CoLNCGH27855, CoLNCGH27866, CoLNCGH27864 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_D09G135300.1, Gh_A09G143700.1, Gh_A09G248600.1, Gh_D09G239400.1, Gh_D07G043100.1, Gh_D03G161800.1, Gh_A11G180600.1, Gh_D07G043100.1, Gh_A12G301100.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |