CoNCRAtlas


CoNCRAtlas ID CoMIRGH226
Mature miRNA sequence GCUCAAGAAAGCUGUGGGAAA
Locus D12:45187895-45188026(-)
Alignment 
Displayed Location: D12:45187885-45188044 Strand: -
UGGGGUUUGGUUGCAUGCUUUUUCACAGCUUUCUUGAACUUGGCUACUCUCUCUGGCUCUGCAUGCCUUCUCUUCUCUAUUCCUACUGGAAGCAUUAAUCCUCAGUCAGUGUAUAUGAAGCUCAAGAAAGCUGUGGGAAAUCAUGGACGCCCCAUUUUUA
).))))).((((.((((.(((((((((((((((((((.(((.(.(((.((..((((......((((.............((((....))))))))......))))..)).)))..).))).))))))))))))))))))).)))).).))))))))))))
.......................................................................................................................GCUCAAGAAAGCUGUGGGAAA.................... ghi-miR396i
....................UUUCACAGCUUUCUUGAACUU....................................................................................................................... ghi-miR396i*
miRNA family miR396

Expression profile

Tissue specificity indexovule: 0.0819; fiber: 0.3709; shoot apical: 0.0164; ovule and fiber: 0.0089; cotyledon: 0.0163; cotton boll: 0.1323; callus: 0.0027; leaf: 0.3025; anthers: 0.0092; hypocotyls: 0.0555; seedlings: 0.0034 | Tau: 0.8304
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH20999, CoLNCGH46770, CoLNCGH34024, CoLNCGH20999, CoLNCGH46769, CoLNCGH46770, CoLNCGH27856, CoLNCGH27855, CoLNCGH27866, CoLNCGH27864
Target CDS Gh_D13G231200.1, Gh_D09G135300.1, Gh_A09G143700.1, Gh_A09G248600.1, Gh_D09G239400.1, Gh_D07G043100.1, Gh_D03G161800.1, Gh_A11G180600.1, Gh_A12G301100.1, Gh_D07G043100.1
sORF
Reference
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PMID Title