CoNCRAtlas


CoNCRAtlas ID CoMIRGH225
Mature miRNA sequence CUAAGGCUGCGUUCUUCAUUGCU
Locus D12:43630867-43631008(-)
Alignment 
Displayed Location: D12:43630900-43631027 Strand: -
AACGAAAUUGUCUACCAUGACUAAGGCUGCGUUCUUCAUUGCUUAACAAACGGACUUUUCCUUGAAAAAAUGCUUUUCUUUGAAAAGCAAUGAAGAACGACCUUCGUUUUGGUAACAAUUUCUCAAAA
...((((((((.(((((.(((.((((...(((((((((((((((..((((.(((....)))..(((((.....)))))))))..))))))))))))))).)))).))).))))))))))))).(((((
....................CUAAGGCUGCGUUCUUCAUUGCU..................................................................................... ghi-miRN42
.......................................................................................CAAUGAAGAACGACCUUCGUU.................... ghi-miRN42*
miRNA family miRN42

Expression profile

Tissue specificity indexovule: 0.3467; fiber: 0.1398; shoot apical: 0.038; ovule and fiber: 0.0193; cotyledon: 0.052; cotton boll: 0.0167; callus: 0.0428; leaf: 0.2204; anthers: 0.0552; hypocotyls: 0.017; seedlings: 0.0521 | Tau: 0.8116
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D124363080843631010+Mutator_TIR_transposon
D124362869243631328-CoLNCGH18408
D124362872143631328-CoLNCGH18409
D124362873843631328-CoLNCGH18410
D124362873843631328-CoLNCGH18411
D124362874543631328-CoLNCGH18412
Target lncRNA CoLNCGH49672, CoLNCGH49672, CoLNCGH06402, CoLNCGH05073, CoLNCGH06942, CoLNCGH06943, CoLNCGH30958, CoLNCGH07505, CoLNCGH07506, CoLNCGH07507
Target CDS Gh_D01G056400.2, Gh_A01G063000.1, Gh_D01G056400.1, Gh_A02G147300.1, Gh_D13G098600.1, Gh_D09G129900.1, Gh_A09G138600.1, Gh_A13G056500.1, Gh_D13G072700.1, Gh_D13G175700.1
sORF
Reference
PMID Title
0NA