CoNCRAtlas


CoNCRAtlas ID CoMIRGH224
Mature miRNA sequence UUAGAUUCACGCACAAACUCG
Locus D12:43470921-43471017(-)
Alignment 
Displayed Location: D12:43470909-43471032 Strand: -
AAAAGAAGAGCCAUAUUUCGAGUUUUGUGCGUGAAUCUAAUAAAACUGUAAUCCACACACAAAAAAUGUGGAUUUGUUUCAUGUUAGAUUCACGCACAAACUCGUAAUCUGUCUUUCCAUUAAU
....(.((((.((.(((.(((((((.((((((((((((((((((((...((((((((.........)))))))).))))..))))))))))))))))))))))).))).)).)))).).)))))
...................................................................................UUAGAUUCACGCACAAACUCG.................... ghi-miR403d
....................AGUUUUGUGCGUGAAUCUAAUA.................................................................................. ghi-miR403d*
miRNA family miR403

Expression profile

Tissue specificity indexovule: 0.0796; fiber: 0.0217; shoot apical: 0.0033; ovule and fiber: 0.5148; cotyledon: 0.0635; cotton boll: 0.0166; callus: 0.0693; leaf: 0.1154; anthers: 0.0442; hypocotyls: 0.0104; seedlings: 0.0612 | Tau: 0.9058

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH18393, CoLNCGH18393, CoLNCGH43637, CoLNCGH43638, CoLNCGH43639, CoLNCGH43640, CoLNCGH18391, CoLNCGH18392, CoLNCGH21998, CoLNCGH21999
Target CDS Gh_A05G356600.1, Gh_A10G239700.1, Gh_A10G239700.1, Gh_Contig00964G000100.1, Gh_Contig00712G000300.1, Gh_Contig00963G001400.1, Gh_A13G240800.1, Gh_D08G218500.1, Gh_A08G105900.1, Gh_D08G106900.1
sORF
Reference
PMID Title
No references available