CoNCRAtlas


CoNCRAtlas ID CoMIRGH222
Mature miRNA sequence CGAACAAAGUCGGGAAUCACCAUG
Locus D12:34106935-34107047(-)
Alignment 
Displayed Location: D12:34106916-34107065 Strand: -
AUUGAAUAAAUAUGAAUUCAUGGUGAUUUCUGAUUGUGUUUGGGUCUAAUCAAUCGAGUGAUAUAUCUUAAAUGUACCAGAGUAACCAGGCUAAAUAGAUAAGACCCGAACAAAGUCGGGAAUCACCAUGAAUUCAUAUUUAAUCAAUAA
(((((.(((((((((((((((((((((((((((((.(((((((((((.(((.((..(((.......(((..........))).......)))..)).))).))))))))))).))))))))))))))))))))))))))))).)))))))
..........................................................................................................CGAACAAAGUCGGGAAUCACCAUG.................... ghi-miRN41
....................UGGUGAUUUCUGAUUGUGUUUGGG.......................................................................................................... ghi-miRN41*
miRNA family miRN41

Expression profile

Tissue specificity indexovule: 0.0406; fiber: 0.0321; shoot apical: 0.0426; ovule and fiber: 0.0958; cotyledon: 0.0159; cotton boll: 0.0606; callus: 0.5049; leaf: 0.0892; anthers: 0.0443; hypocotyls: 0.0678; seedlings: 0.0062 | Tau: 0.9019

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH33364, CoLNCGH33365, CoLNCGH40182, CoLNCGH39999, CoLNCGH39998, CoLNCGH32707, CoLNCGH11989, CoLNCGH27844, CoLNCGH27843, CoLNCGH27841
Target CDS Gh_A07G071600.1, Gh_D07G070800.1, Gh_A10G190800.1, Gh_A08G208500.1, Gh_A03G027900.1, Gh_D03G168700.1, Gh_D08G203900.1, Gh_A09G059900.1, Gh_A12G003700.1, Gh_D12G003100.1
sORF
Reference
PMID Title
No references available