CoNCRAtlas


CoNCRAtlas ID CoMIRGH221
Mature miRNA sequence GGUUGGUGUGCAGGGGGUGGAAUA
Locus D12:12992062-12992137(-)
Alignment 
Displayed Location: D12:12992043-12992157 Strand: -
UGACAUGGGUUUAUGUUAUAUUCCAUCUCUUGCACACUGGACUAGCCAGCUUUUUGUUGGCUUCAGCUUCAGGUUGGUGUGCAGGGGGUGGAAUACAUCAUUGAUAUCAUGGGAU
))))).))))))(((...(((((((((((((((((((..(((((((((((.....))))))).........)))).)))))))))))))))))))...)))..(((((....)))
.......................................................................GGUUGGUGUGCAGGGGGUGGAAUA.................... ghi-miR2950c
....................UUCCAUCUCUUGCACACUGGACUAG...................................................................... ghi-miR2950c*
miRNA family miR2950

Expression profile

Tissue specificity indexovule: 0.0022; fiber: 0.0271; shoot apical: 0.5703; ovule and fiber: 0.0025; cotyledon: 0.0013; cotton boll: 0.0127; callus: 0.0013; leaf: 0.0695; anthers: 0.261; hypocotyls: 0.052 | Tau: 0.9247
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D121299040112992231-CoLNCGH17943
D121299045512992231-CoLNCGH17944
D121299126412992231-CoLNCGH17945
Target lncRNA CoLNCGH01721, CoLNCGH01722, CoLNCGH01723, CoLNCGH26709, CoLNCGH17943, CoLNCGH17944, CoLNCGH17945, CoLNCGH34604, CoLNCGH34605, CoLNCGH42850
Target CDS Gh_D13G217600.1, Gh_A13G214300.1, Gh_D05G039500.1, Gh_A06G038500.1, Gh_D04G164500.1, Gh_A09G152900.1, Gh_D11G305500.1, Gh_A07G032300.1, Gh_A07G032300.2, Gh_D07G033700.1
sORF
Reference
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PMID Title