| CoNCRAtlas ID | CoMIRGH221 |
|---|---|
| Mature miRNA sequence | GGUUGGUGUGCAGGGGGUGGAAUA |
| Locus | D12:12992062-12992137(-) |
| Alignment | Displayed Location: D12:12992043-12992157 Strand: - UGACAUGGGUUUAUGUUAUAUUCCAUCUCUUGCACACUGGACUAGCCAGCUUUUUGUUGGCUUCAGCUUCAGGUUGGUGUGCAGGGGGUGGAAUACAUCAUUGAUAUCAUGGGAU ))))).))))))(((...(((((((((((((((((((..(((((((((((.....))))))).........)))).)))))))))))))))))))...)))..(((((....))) .......................................................................GGUUGGUGUGCAGGGGGUGGAAUA.................... ghi-miR2950c ....................UUCCAUCUCUUGCACACUGGACUAG...................................................................... ghi-miR2950c* |
| miRNA family | miR2950 |
Expression profile
| Tissue specificity index | ovule: 0.0022; fiber: 0.0271; shoot apical: 0.5703; ovule and fiber: 0.0025; cotyledon: 0.0013; cotton boll: 0.0127; callus: 0.0013; leaf: 0.0695; anthers: 0.261; hypocotyls: 0.052 | Tau: 0.9247 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH01721, CoLNCGH01722, CoLNCGH01723, CoLNCGH26709, CoLNCGH17943, CoLNCGH17944, CoLNCGH17945, CoLNCGH34604, CoLNCGH34605, CoLNCGH42850 |
|---|
| Target CDS | Gh_D13G217600.1, Gh_A13G214300.1, Gh_D05G039500.1, Gh_A06G038500.1, Gh_D04G164500.1, Gh_A09G152900.1, Gh_D11G305500.1, Gh_A07G032300.1, Gh_A07G032300.2, Gh_D07G033700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |