CoNCRAtlas


CoNCRAtlas ID CoMIRGH218
Mature miRNA sequence AUGUCACUCUCUCAUGCUGUU
Locus D11:71723103-71723385(+)
Alignment 
Displayed Location: D11:71723099-71723394 Strand: +
AUGCUAUGAUGGACCUCUAACAGCUUGAGAGCGUGACAAUUCCACGUGAGUGAAUCUCUAUUGUUACUCGAUGAUAACUGGGUGAACUCUAUGUCGGAUAAAGGCAAAAAUAAUGUGACCGUGAAGAUGUUUCAGAUAAGUUCCUUUGCUUCUUUUCUGGCUUCGGCUAACAUAAAGUUCACCUGGUUAUCAUCGGGUAACAAUGGUGGUUGUUUAACUUUAAACAAUAAACAAUCGGAUGAUUCGCGUGGUUCAAAUGUCACUCUCUCAUGCUGUUUAAGGUACUUUAUAGGUUG
...((((((.(.((((..((((((.((((((.((((((...((((((((((..(((((((((((((((((((((((((((((((((((.(((((.(((...((((((((((.((.(((.(((....)))..))).))..)))..)))))))...)))((((....))))))))).))))))))))))))))))))))))))))))).(((((((((...........))))))))))))).))))))))))......)))))).)))))).))))))..)))).).))))))....
................................................................................................................................................................................................................................................................AUGUCACUCUCUCAUGCUGUU................... ghi-miR1402
....................CAGCUUGAGAGCGUGACAAUU............................................................................................................................................................................................................................................................... ghi-miR1402*
miRNA family miR1402

Expression profile

Tissue specificity indexovule: 0.1873; fiber: 0.1527; shoot apical: 0.0184; ovule and fiber: 0.0562; cotyledon: 0.0784; cotton boll: 0.048; callus: 0.0805; leaf: 0.1838; anthers: 0.0795; hypocotyls: 0.0373; seedlings: 0.0781 | Tau: 0.5662

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH42140, CoLNCGH42141, CoLNCGH42140, CoLNCGH42140, CoLNCGH42141, CoLNCGH42140, CoLNCGH42201, CoLNCGH41059, CoLNCGH48964, CoLNCGH48963
Target CDS Gh_D07G038300.1, Gh_A07G037300.1, Gh_A13G165700.2, Gh_A13G165700.1, Gh_D11G377200.1, Gh_D13G167800.1, Gh_D13G168800.1, Gh_A01G062200.1, Gh_D12G000900.1, Gh_D12G000900.2
sORF
Reference
PMID Title
No references available