CoNCRAtlas


CoNCRAtlas ID CoMIRGH217
Mature miRNA sequence CAAGAAAAGAAGUCGGGAGAG
Locus D11:71720354-71720618(+)
Alignment 
Displayed Location: D11:71720450-71720579 Strand: +
CCUCCAUUGUUGGCAGGAAGCAAGAAAAGAAGUCGGGAGAGAAUUUUCGAUCGGUUCCCUUUAGCUUCUCAAAACUUAUCCGAAAUCCUUUCCCGGCUUCUUUUCUUGCUUUCGUUUAAUUGUUCGUUUG
(..(((....)))..((((((((((((((((((((((((((.(((((.(((.((((................)))).))).))))).))))))))))))))))))))))))))........)))))))))
....................CAAGAAAAGAAGUCGGGAGAG......................................................................................... ghi-miR7508b
.........................................................................................UUCCCGGCUUCUUUUCUUGCU.................... ghi-miR7508b*
miRNA family miR7508

Expression profile

Tissue specificity indexovule: 0.2154; fiber: 0.0833; shoot apical: 0.1749; ovule and fiber: 0.0311; cotyledon: 0.0126; cotton boll: 0.0245; callus: 0.0328; leaf: 0.1211; anthers: 0.0666; hypocotyls: 0.2192; seedlings: 0.0186 | Tau: 0.6439

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH42146, CoLNCGH42147, CoLNCGH42145, CoLNCGH42172, CoLNCGH42171, CoLNCGH42170, CoLNCGH42168, CoLNCGH42169, CoLNCGH28200, CoLNCGH28201
Target CDS Gh_D11G376600.1, Gh_A11G368600.1, Gh_A06G104300.1, Gh_D05G013700.1, Gh_A03G072100.1, Gh_D03G125000.1, Gh_A06G058800.3, Gh_D06G057000.2, Gh_A04G112200.1, Gh_D04G150400.1
sORF
Reference
PMID Title
No references available