CoNCRAtlas


CoNCRAtlas ID CoMIRGH215
Mature miRNA sequence GGCAGGUUGUCUUUGGCUACA
Locus D11:54906662-54906813(+)
Alignment 
Displayed Location: D11:54906681-54906795 Strand: +
UAGGCCUAGAAAGGAUGGUGUAGCCAAGGAUGACUUGCCGACUCUUCCUCCUCCCAUCAUGAUAAGUGGUCGUCGGCAGGUUGUCUUUGGCUACAUUUUUCUUUCCGCUCCUCAU
.(((....(((((((.((((((((((((((((((((((((((...........((((........))))..)))))))))))))))))))))))))).)))))))....))).))
..........................................................................GGCAGGUUGUCUUUGGCUACA.................... ghi-miRN39
....................UAGCCAAGGAUGACUUGCCGA.......................................................................... ghi-miRN39*
miRNA family miRN39

Expression profile

Tissue specificity indexovule: 0.0061; fiber: 0.091; shoot apical: 0.1128; ovule and fiber: 0.0084; cotyledon: 0.3261; cotton boll: 0.059; callus: 0.0334; leaf: 0.0671; anthers: 0.296 | Tau: 0.7934

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH24405, CoLNCGH24408, CoLNCGH24409, CoLNCGH24410, CoLNCGH24411, CoLNCGH24412, CoLNCGH24413, CoLNCGH02300, CoLNCGH02301, CoLNCGH31822
Target CDS Gh_D03G101800.1, Gh_A03G094800.1, Gh_A02G034000.1, Gh_D02G039400.1, Gh_A02G033800.1, Gh_D02G039600.1, Gh_D02G039800.1, Gh_D08G258500.1, Gh_D02G063700.1, Gh_D02G064400.1
sORF
Reference
PMID Title
No references available