CoNCRAtlas


CoNCRAtlas ID CoMIRGH214
Mature miRNA sequence UCUCGGACCAGGCUUCAUUCC
Locus D11:52615670-52615851(+)
Alignment 
Displayed Location: D11:52615703-52615834 Strand: +
GAAGAAAAGAGGGUGUAUGGAAUGAAGUUUGAUCCAAGAUCCAUCAAUCAUCUCUCUUUUUUAAGUCAUGAAUUAUGAUGAUAUUAAUGGAUCUCGGACCAGGCUUCAUUCCUCACACCAUGCUUUUCCAUU
...((((((..(((((..(((((((((((((.(((.((((((((..((((((........................))))))....)))))))).))).)))))))))))))..)))))...))))))))))
...........................................................................................UCUCGGACCAGGCUUCAUUCC.................... ghi-miR166n
....................AAUGAAGUUUGAUCCAAGAUC........................................................................................... ghi-miR166n*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0197; fiber: 0.0083; shoot apical: 0.0313; ovule and fiber: 0.0628; cotyledon: 0.2116; cotton boll: 0.0042; callus: 0.0003; leaf: 0.2483; anthers: 0.3304; hypocotyls: 0.0814; seedlings: 0.0017 | Tau: 0.7973

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH03729, CoLNCGH03730, CoLNCGH03731, CoLNCGH03732, CoLNCGH45338, CoLNCGH53014, CoLNCGH45337, CoLNCGH45336, CoLNCGH45335, CoLNCGH32066
Target CDS Gh_A09G141400.1, Gh_A01G232900.1, Gh_D01G227300.1, Gh_A09G158600.1, Gh_D09G149700.1, Gh_D04G086200.1, Gh_A05G339000.1, Gh_D03G020300.1, Gh_D01G093700.1, Gh_A02G191000.1
sORF
Reference
PMID Title
No references available