CoNCRAtlas


CoNCRAtlas ID CoMIRGH213
Mature miRNA sequence AGGGUGUAAGAACGGCAGUAG
Locus D11:35567130-35567219(+)
Alignment 
Displayed Location: D11:35567117-35567229 Strand: +
CCUUAUUUGUACUUUGCUGAAGGGUGUAAGAACGGCAGUAGCUGUAAGUUCGUUCAUGGAGAUACAGCUACUACCGUUCUUACAAAACCCUCCAGCAUGGUGGAAAUUCAACA
....))))))....(((((.(((((((((((((((.((((((((((..(((......)))..)))))))))).))))))))))...))))).)))))))))))).((((((..
....................AGGGUGUAAGAACGGCAGUAG........................................................................ ghi-miRN38
.....................................................................ACUACCGUUCUUACAAAACCCUCC.................... ghi-miRN38*
miRNA family miRN38

Expression profile

Tissue specificity indexovule: 0.078; fiber: 0.0241; shoot apical: 0.0761; ovule and fiber: 0.6243; cotyledon: 0.0006; cotton boll: 0.0132; callus: 0.0003; leaf: 0.0067; anthers: 0.0715; hypocotyls: 0.1046; seedlings: 0.0007 | Tau: 0.9398
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH46108, CoLNCGH46107, CoLNCGH16949, CoLNCGH03084, CoLNCGH03083, CoLNCGH03082, CoLNCGH37598, CoLNCGH46915, CoLNCGH46913, CoLNCGH46914
Target CDS Gh_A13G243800.1, Gh_D13G246100.1, Gh_A09G129800.1, Gh_A09G129900.1, Gh_D09G122400.1, Gh_D09G122300.1, Gh_D11G165500.1, Gh_A11G112100.1, Gh_D07G167300.1, Gh_A13G242000.1
sORF
Reference
PMID Title
0NA