CoNCRAtlas


CoNCRAtlas ID CoMIRGH210
Mature miRNA sequence ACUCUCCCUCAAGGGCUUCCUG
Locus D11:1969754-1969915(+)
Alignment 
Displayed Location: D11:1969736-1969849 Strand: +
UUACAAGGCAUUGGUUCCUCACUCUCCCUCAAGGGCUUCCUGCAAUGCCACCGAAUACUGCCCUGGCAAUGCUGGAAAUCUUUGGGGAGAGUGAAAUAAACUUGCCUUGCUAAA
...)))))....((((..((((((((((.((((((.((((.(((.(((((.............))))).))).)))).))))))))))))))))....)))).))))))))...
....................ACUCUCCCUCAAGGGCUUCCUG........................................................................ ghi-miR477e
.........................................................................GGAAAUCUUUGGGGAGAGUGA.................... ghi-miR477e*
miRNA family miR477

Expression profile

Tissue specificity indexovule: 0.2224; fiber: 0.4213; shoot apical: 0.0237; ovule and fiber: 0.002; cotyledon: 0.0018; cotton boll: 0.2173; callus: 0.0095; leaf: 0.0866; anthers: 0.0139; seedlings: 0.0015 | Tau: 0.8627
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D1119695301970817+CoLNCGH15111
Target lncRNA CoLNCGH39075, CoLNCGH39075, CoLNCGH39075, CoLNCGH52390, CoLNCGH52389, CoLNCGH44441, CoLNCGH44442, CoLNCGH35668, CoLNCGH35673, CoLNCGH35672
Target CDS Gh_A09G272500.1, Gh_D09G261700.1, Gh_D03G014200.1, Gh_A02G197000.1, Gh_A09G207900.1, Gh_A02G051100.1, Gh_D02G055700.1, Gh_D01G124000.1, Gh_A01G124700.1, Gh_A01G223800.1
sORF
Reference
PMID Title
0NA