| CoNCRAtlas ID | CoMIRGH209 |
|---|---|
| Mature miRNA sequence | UGACAAUGAGAGAGAGCACGC |
| Locus | D11:14978124-14978214(-) |
| Alignment | Displayed Location: D11:14978111-14978230 Strand: - GAUUGACACGCAUUGUCAAUUGACAAUGAGAGAGAGCACGCUUGUUGCCAUUCAUGCAAGGGCAUGGAUGUAUACAAGCGUGCUCUCUGUCGUUGUCAUAUGAUUUGUUCAAAGCUGUCA ((.(((((.((.((((((..(((((((((.(((((((((((((((...(((((((((....)))))))))...))))))))))))))).)))))))))..)))......))).))))))) ....................UGACAAUGAGAGAGAGCACGC............................................................................... ghi-miR535d ...............................................................................GUGCUCUCUGUCGUUGUCAUA.................... ghi-miR535d* |
| miRNA family | miR535 |
Expression profile
| Tissue specificity index | ovule: 0.0126; fiber: 0.0302; shoot apical: 0.3645; ovule and fiber: 0.0588; cotyledon: 0.0055; cotton boll: 0.0028; callus: 0.0102; leaf: 0.1432; anthers: 0.0541; hypocotyls: 0.3152; seedlings: 0.0029 | Tau: 0.8256 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH39866, CoLNCGH39866, CoLNCGH30288, CoLNCGH30287, CoLNCGH30286, CoLNCGH30284, CoLNCGH30285, CoLNCGH07236, CoLNCGH07235, CoLNCGH30283 |
|---|
| Target CDS | Gh_A07G099000.1, Gh_A01G164500.1, Gh_A07G099000.1, Gh_D11G154200.1, Gh_D11G154200.1, Gh_D07G227700.1, Gh_A03G135600.1, Gh_D02G164900.1, Gh_A11G013700.1, Gh_A10G132500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |