CoNCRAtlas


CoNCRAtlas ID CoMIRGH209
Mature miRNA sequence UGACAAUGAGAGAGAGCACGC
Locus D11:14978124-14978214(-)
Alignment 
Displayed Location: D11:14978111-14978230 Strand: -
GAUUGACACGCAUUGUCAAUUGACAAUGAGAGAGAGCACGCUUGUUGCCAUUCAUGCAAGGGCAUGGAUGUAUACAAGCGUGCUCUCUGUCGUUGUCAUAUGAUUUGUUCAAAGCUGUCA
((.(((((.((.((((((..(((((((((.(((((((((((((((...(((((((((....)))))))))...))))))))))))))).)))))))))..)))......))).)))))))
....................UGACAAUGAGAGAGAGCACGC............................................................................... ghi-miR535d
...............................................................................GUGCUCUCUGUCGUUGUCAUA.................... ghi-miR535d*
miRNA family miR535

Expression profile

Tissue specificity indexovule: 0.0126; fiber: 0.0302; shoot apical: 0.3645; ovule and fiber: 0.0588; cotyledon: 0.0055; cotton boll: 0.0028; callus: 0.0102; leaf: 0.1432; anthers: 0.0541; hypocotyls: 0.3152; seedlings: 0.0029 | Tau: 0.8256
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D111497544514979744-CoLNCGH15815
D111497552214979744-CoLNCGH15816
D111497557014979744-CoLNCGH15817
D111497579414978471-CoLNCGH15818
D111497583614978977-CoLNCGH15820
D111497599114979793-CoLNCGH15821
D111497613814979744-CoLNCGH15822
Target lncRNA CoLNCGH39866, CoLNCGH39866, CoLNCGH30288, CoLNCGH30287, CoLNCGH30286, CoLNCGH30284, CoLNCGH30285, CoLNCGH07236, CoLNCGH07235, CoLNCGH30283
Target CDS Gh_A07G099000.1, Gh_A01G164500.1, Gh_A07G099000.1, Gh_D11G154200.1, Gh_D11G154200.1, Gh_D07G227700.1, Gh_A03G135600.1, Gh_D02G164900.1, Gh_A11G013700.1, Gh_A10G132500.1
sORF
Reference
PMID Title
22160515Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity