| CoNCRAtlas ID | CoMIRGH204 |
|---|---|
| Mature miRNA sequence | UGAUUGAGCCGUGCCAAUAUC |
| Locus | D10:9527450-9527535(+) |
| Alignment | Displayed Location: D10:9527435-9527548 Strand: + CAAAGGUGGUGUACGAUGGAUGUUGGCACGGUUCAAUCCGAUCAAAUCUCUCAGUGGGCUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUCAAUCUCUCUCUGUCACACAC .....((((((.(((((.((((((((((((((((((((.(((.(((...(((((....)))))...))).))).)))))))))))))))))))).))).......))))).))) .........................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR171j ....................UGUUGGCACGGUUCAAUCCGA......................................................................... ghi-miR171j* |
| miRNA family | miR171 |
Expression profile
| Tissue specificity index | ovule: 0.0087; fiber: 0.0113; shoot apical: 0.1628; ovule and fiber: 0.4364; cotyledon: 0.0002; cotton boll: 0.0085; callus: 0.0016; leaf: 0.3093; anthers: 0.0612 | Tau: 0.8709 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH17852, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH12977, CoLNCGH36567, CoLNCGH12976 |
|---|
| Target CDS | Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |