CoNCRAtlas


CoNCRAtlas ID CoMIRGH204
Mature miRNA sequence UGAUUGAGCCGUGCCAAUAUC
Locus D10:9527450-9527535(+)
Alignment 
Displayed Location: D10:9527435-9527548 Strand: +
CAAAGGUGGUGUACGAUGGAUGUUGGCACGGUUCAAUCCGAUCAAAUCUCUCAGUGGGCUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUCAAUCUCUCUCUGUCACACAC
.....((((((.(((((.((((((((((((((((((((.(((.(((...(((((....)))))...))).))).)))))))))))))))))))).))).......))))).)))
.........................................................................UGAUUGAGCCGUGCCAAUAUC.................... ghi-miR171j
....................UGUUGGCACGGUUCAAUCCGA......................................................................... ghi-miR171j*
miRNA family miR171

Expression profile

Tissue specificity indexovule: 0.0087; fiber: 0.0113; shoot apical: 0.1628; ovule and fiber: 0.4364; cotyledon: 0.0002; cotton boll: 0.0085; callus: 0.0016; leaf: 0.3093; anthers: 0.0612 | Tau: 0.8709
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH17852, CoLNCGH26838, CoLNCGH36571, CoLNCGH36570, CoLNCGH36569, CoLNCGH36568, CoLNCGH12978, CoLNCGH12977, CoLNCGH36567, CoLNCGH12976
Target CDS Gh_D12G109400.1, Gh_A12G109700.1, Gh_A08G196200.1, Gh_D08G192900.1, Gh_A12G245400.1, Gh_D12G239800.1, Gh_A03G014800.1, Gh_D03G180900.1, Gh_A12G109800.1, Gh_D12G109500.1
sORF
Reference
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PMID Title