| CoNCRAtlas ID | CoMIRGH202 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAU |
| Locus | D10:59170211-59170302(+) |
| Alignment | Displayed Location: D10:59170196-59170322 Strand: + AUCAGUCAUUUUUUGCUGAUGCAGCAUCUUCAAGAUUCACAUGCAAAGUAUAGUACGGCCAGGCCAUAGCUUUUGUUUGAAGCAUGAGAAUCUUGAUGAUGCUGCAUCGGCCAUUAAUGACUCCACA ...(((((((..(.((((((((((((((.(((((((((.((((((((....(((..(((...)))...)))....)))...))))).))))))))).)))))))))))))).)..)))))))..... ......................................................................................AGAAUCUUGAUGAUGCUGCAU.................... ghi-miR172j ....................GCAGCAUCUUCAAGAUUCACA...................................................................................... ghi-miR172j* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | fiber: 0.0174; shoot apical: 0.3914; cotyledon: 0.0055; cotton boll: 0.0015; leaf: 0.0999; anthers: 0.4747; hypocotyls: 0.0096 | Tau: 0.8893 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH21180, CoLNCGH50754, CoLNCGH50755, CoLNCGH14897 |
|---|
| Target CDS | Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_D10G236700.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_A05G087000.1, Gh_A03G047000.1, Gh_D05G098700.1, Gh_A10G213200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |