CoNCRAtlas



CoNCRAtlas ID CoMIRGH202
Mature miRNA sequence AGAAUCUUGAUGAUGCUGCAU
Locus D10:59170211-59170302(+)
Alignment
Displayed Location: D10:59170196-59170322 Strand: +
AUCAGUCAUUUUUUGCUGAUGCAGCAUCUUCAAGAUUCACAUGCAAAGUAUAGUACGGCCAGGCCAUAGCUUUUGUUUGAAGCAUGAGAAUCUUGAUGAUGCUGCAUCGGCCAUUAAUGACUCCACA
...(((((((..(.((((((((((((((.(((((((((.((((((((....(((..(((...)))...)))....)))...))))).))))))))).)))))))))))))).)..))))))).....
......................................................................................AGAAUCUUGAUGAUGCUGCAU.................... ghi-miR172j
....................GCAGCAUCUUCAAGAUUCACA...................................................................................... ghi-miR172j*
miRNA family miR172

Expression profile

Tissue specificity indexfiber: 0.0174; shoot apical: 0.3914; cotyledon: 0.0055; cotton boll: 0.0015; leaf: 0.0999; anthers: 0.4747; hypocotyls: 0.0096 | Tau: 0.8893
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D105916952659172618+CoLNCGH14824
D105916984559172618+CoLNCGH14825
Target lncRNA CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH21180, CoLNCGH50754, CoLNCGH50755, CoLNCGH14897
Target CDS Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_D10G236700.1, Gh_A03G047000.1, Gh_A05G087000.1, Gh_D05G098700.1, Gh_A10G213200.1
sORF
Reference
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PMID Title