| CoNCRAtlas ID | CoMIRGH201 |
|---|---|
| Mature miRNA sequence | UUUGUUUAUGGUCAUCUAAGC |
| Locus | D10:59025402-59025529(+) |
| Alignment | Displayed Location: D10:59025388-59025548 Strand: + AAAAUGCAUUGUUGAAUGUGUUUGUUUAUGGUCAUCUAAGCCAUUUUUCAUCUCGCCAAUUCUUUGUUCAAGCAGUUUUUGGAUAAUCGAACCGAUAGACUACACCCGCAGAAAUGAUGUUUAGAUGACCAUCAACAAACAACUUCAUCUUAUUGCAUCAA ...(((((..(.((((..((((((((.((((((((((((((((((((((......((((....((((....))))...))))...((((...))))...........).)))))))..)))))))))))))).))))))))..)))).)....)))))... ....................UUUGUUUAUGGUCAUCUAAGC........................................................................................................................ ghi-miR827b ........................................................................................................................UUAGAUGACCAUCAACAAACA.................... ghi-miR827b* |
| miRNA family | miR827 |
Expression profile
| Tissue specificity index | ovule: 0.0349; fiber: 0.0073; shoot apical: 0.0074; ovule and fiber: 0.017; cotyledon: 0.296; cotton boll: 0.0049; callus: 0.059; leaf: 0.3058; anthers: 0.0013; hypocotyls: 0.0062; seedlings: 0.2602 | Tau: 0.773 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH14816, CoLNCGH14816, CoLNCGH14815, CoLNCGH14789, CoLNCGH14815, CoLNCGH14814, CoLNCGH38648, CoLNCGH14813, CoLNCGH14814, CoLNCGH38648 |
|---|
| Target CDS | Gh_D04G205400.1, Gh_A03G249000.1, Gh_D05G096900.1, Gh_A04G160500.1, Gh_D02G264400.1, Gh_A13G234000.1, Gh_D06G086600.1, Gh_D07G090100.1, Gh_A07G091500.1, Gh_D06G073700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |